PFRMAT SS
TARGET T0467
AUTHOR SAM-T02-server 
METHOD This file is the result of combining several RDB files, specifically
METHOD T0467.t2k.dssp-ebghstl.rdb  (weight 1.53986)
METHOD T0467.t2k.stride-ebghtl.rdb  (weight 1.24869)
METHOD T0467.t2k.str.rdb  (weight 1.53983)
METHOD These files were combined by translating their predictions into EHL
METHOD predictions with tables generated by compare-real, and then combining
METHOD those predictions with weights proportional to their mutual information
METHOD with the EHL alphabet.  The comments from the individual files follow.
METHOD
METHOD Comments from T0467.t2k.dssp-ebghstl.rdb
METHOD ============================================
METHOD TARGET T0467
METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    7 (1 EBGHSTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0467.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 86
METHOD
METHOD ============================================
METHOD Comments from T0467.t2k.stride-ebghtl.rdb
METHOD ============================================
METHOD TARGET T0467
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    6 (1 EBGHTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0467.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 86
METHOD
METHOD ============================================
METHOD Comments from T0467.t2k.str.rdb
METHOD ============================================
METHOD TARGET T0467
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-str-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   13 (1 str )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0467.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 86
METHOD
METHOD ============================================
MODEL 1
M C 0.93
D C 0.79
L C 0.64
N C 0.56
R C 0.53
M C 0.60
G C 0.75
K C 0.79
D C 0.64
E E 0.55
Y E 0.64
Y E 0.77
V E 0.90
Q E 0.94
I E 0.92
T E 0.79
V C 0.51
D C 0.59
G E 0.70
K E 0.88
E E 0.94
V E 0.94
H E 0.90
S E 0.69
K C 0.55
A C 0.79
D C 0.84
N C 0.86
G C 0.80
Q C 0.62
K C 0.51
Y E 0.59
K E 0.72
D E 0.83
Y E 0.92
E E 0.95
Y E 0.95
K E 0.95
L E 0.89
T E 0.88
G E 0.88
F E 0.92
D C 0.56
K C 0.95
D C 0.97
G C 0.95
K C 0.67
E E 0.91
K E 0.94
E E 0.96
L E 0.96
E E 0.96
F E 0.94
T E 0.71
A C 0.71
Q C 0.87
K C 0.85
N C 0.78
L C 0.73
R C 0.84
K C 0.83
E C 0.87
A C 0.58
F E 0.87
L E 0.96
R E 0.97
V E 0.97
Y E 0.96
H E 0.90
S C 0.56
D C 0.88
K C 0.80
K C 0.74
G C 0.64
V E 0.71
S E 0.78
A E 0.69
W C 0.39
E E 0.47
E E 0.50
V C 0.61
K C 0.75
K H 0.74
D H 0.67
E H 0.64
L C 0.73
P C 0.75
A H 0.91
K H 0.94
V H 0.96
K H 0.96
E H 0.92
K H 0.86
L H 0.60
G C 0.79
V C 0.88
K C 0.97
END