# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1v3yA 192 2.265 d.167.1.1 113508 1bnzA 64 2.779 b.34.13.1 37468 1bf4A 63 3.155 b.34.13.1 37461 1azpA 66 5.510 b.34.13.1 37467 1v0aA 178 5.682 b.18.1.30 119815 1c8cA 64 5.888 b.34.13.1 59084 1pfoA 500 6.282 f.9.1.1 43826 1bb8 71 6.544 2cxyA 125 7.036 1xyiA 66 7.359 1yliA 153 7.773 d.38.1.1 123651 2rb6A 61 8.017 3bduA 62 9.319 2q2bA 179 10.99 4kbpA 432 11.39 b.1.12.1,d.159.1.1 22345,42064 1ec7A 446 11.51 c.1.11.2,d.54.1.1 29218,38862 2eisA 133 12.60 1g6nA 210 13.27 a.4.5.4,b.82.3.2 16100,28139 2jfrA 234 13.82 1lmeA 176 14.36 d.167.1.1 84629 1b69A 69 14.60 d.10.1.1 37479 2jesA 503 14.86 1uhgA 385 15.48 e.1.1.1 88491 1aunA 208 16.30 b.25.1.1 23900 1pfo 500 16.96 1bbxC 63 17.10 b.34.13.1 37465 1je3A 97 17.79 d.68.3.3 71637 1dtgA 334 18.02 c.94.1.2 35896 1d3cA 686 18.16 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 3bjkA 153 18.94 1bb8A 71 20.59 d.10.1.1 37478 1f0cA 305 20.61 e.1.1.1 42676 2v1oA 151 20.62 2jn0A 61 21.83 1y6hA 177 21.84 d.167.1.1 116505 1m3iA 471 25.74 f.9.1.1 91178 2uurA 245 25.91 1n5nA 180 26.23 d.167.1.1 85336 1l0qA 391 26.39 b.1.3.1,b.69.2.3 77644,77645 1vpmA 169 29.41 d.38.1.1 113967 1g72A 573 30.36 b.70.1.1 27680 1eg2A 319 31.68 c.66.1.11 34249 1cf7A 76 31.88 a.4.5.17 16151 1wmdA 434 32.22 b.18.1.20,c.41.1.1 109408,109409 2yxmA 100 32.91 2j82A 240 33.57 1lqwA 183 33.58 d.167.1.1 74210 2r78A 117 36.12 1rowA 109 39.06 b.1.11.2 97676 1s3rA 535 39.35 1ogoX 574 39.89 b.133.1.1,b.80.1.10 92925,92926 1ygyA 529 41.16 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1lmhA 184 41.50 d.167.1.1 74036 2inbA 140 42.05 2ra2A 64 42.95 1fbnA 230 43.27 c.66.1.3 34181 1jsuC 84 43.68 j.55.1.1 46339 1a41A 234 48.34 d.163.1.2 42174 1k3xA 262 48.54 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 2d5xB 146 51.04 a.1.1.2 131283 1a6pA 94 53.14 b.1.1.1 19748 1dkxA 219 53.42 a.8.4.1,b.130.1.1 90339,90340 1sjyA 159 56.02 d.113.1.1 98900 1bwsA 321 56.04 c.2.1.2 29812 1dkzA 219 56.15 a.8.4.1,b.130.1.1 90345,90346 1rl4A 188 56.72 d.167.1.1 97636 1ig6A 107 58.34 a.4.3.1 62364 1e6uA 321 59.03 c.2.1.2 29805 2i1b 153 59.26 2cm1A 260 60.24 1bsvA 321 60.81 c.2.1.2 29809 2hzqA 174 62.73 1jdqA 98 64.18 d.68.3.3 66559 1bs4A 168 66.31 d.167.1.1 42287 1ryoA 327 66.49 c.94.1.2 98108 1nu5A 370 66.77 c.1.11.2,d.54.1.1 92183,92184 1cj3A 392 67.47 c.3.1.2,d.16.1.2 30347,37878 1p4uA 153 67.52 b.1.10.2 87780 1ifrA 121 67.56 b.1.16.1 71203 1np1A 184 68.98 b.60.1.1 27155 1gof 639 69.67 1xeoA 168 70.26 d.167.1.1 121913 1f42A 306 71.48 b.1.1.4,b.1.2.1,b.1.2.1 59636,59637,59638 1bqk 124 71.51 1a64A 97 71.69 b.1.1.1 19750 1j58A 385 72.50 b.82.1.2 71531 1rlwA 126 73.24 b.7.1.1 23177 2b6dA 345 73.45 c.94.1.2 127985 1a8e 329 74.23 1txoA 237 74.26 d.219.1.1 112781 1dxtB 147 76.32 a.1.1.2 15450 1ub4C 85 78.39 b.129.1.1 88401 1o98A 511 80.89 c.105.1.1,c.76.1.3 86684,86685 2blrA 206 81.82 b.25.1.1 128741 2i0oA 304 82.40 1cmyB 146 82.47 a.1.1.2 15544 2rftA 344 82.92 2h6bA 250 83.08 1r5lA 262 83.27 a.5.3.1,c.13.1.1 97099,97100 2os5A 119 83.28 1k3iA 656 83.64 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 2ikbA 167 83.79 4aahA 571 84.10 b.70.1.1 27678 1ujxA 119 85.01 b.26.1.2 99473 2iyvA 184 85.32 c.37.1.2 137812 2nw2B 243 86.47 1gmuA 143 86.53 b.107.1.1,d.58.38.1 65335,65336 1jjoC 261 87.30 1v58A 241 87.88 c.47.1.9,d.17.3.1 108371,108372 1ctdA 36 88.91 a.39.1.5 17230