# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1bf4A 63 1.275 b.34.13.1 37461 1bnzA 64 1.816 b.34.13.1 37468 1c8cA 64 3.130 b.34.13.1 59084 1azpA 66 3.358 b.34.13.1 37467 1xyiA 66 3.426 1aunA 208 4.397 b.25.1.1 23900 1pfoA 500 4.709 f.9.1.1 43826 2rb6A 61 8.721 1f0cA 305 9.599 e.1.1.1 42676 1v3yA 192 9.97 d.167.1.1 113508 1pfo 500 10.20 1bbxC 63 11.53 b.34.13.1 37465 1yliA 153 13.09 d.38.1.1 123651 1je3A 97 13.21 d.68.3.3 71637 2q2bA 179 13.54 1ec7A 446 14.80 c.1.11.2,d.54.1.1 29218,38862 2jfrA 234 15.60 2eisA 133 16.13 3bduA 62 16.22 1g6nA 210 17.36 a.4.5.4,b.82.3.2 16100,28139 2r78A 117 20.73 1wmdA 434 20.82 b.18.1.20,c.41.1.1 109408,109409 1ogoX 574 21.50 b.133.1.1,b.80.1.10 92925,92926 1jdqA 98 23.90 d.68.3.3 66559 3bjkA 153 24.72 1v0aA 178 24.93 b.18.1.30 119815 1bb8 71 26.41 1y6hA 177 26.45 d.167.1.1 116505 1l0qA 391 27.55 b.1.3.1,b.69.2.3 77644,77645 1lmeA 176 27.70 d.167.1.1 84629 2blrA 206 27.74 b.25.1.1 128741 2v1oA 151 29.63 1rowA 109 31.27 b.1.11.2 97676 1lqwA 183 31.47 d.167.1.1 74210 1lmhA 184 31.60 d.167.1.1 74036 2jn0A 61 32.48 1cj3A 392 32.72 c.3.1.2,d.16.1.2 30347,37878 1uhgA 385 33.49 e.1.1.1 88491 1jjoC 261 34.11 1s3rA 535 34.43 1fbnA 230 34.65 c.66.1.3 34181 1eg2A 319 38.43 c.66.1.11 34249 1cxqA 162 40.81 c.55.3.2 33621 1g72A 573 41.22 b.70.1.1 27680 1ygyA 529 41.35 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1vpmA 169 41.64 d.38.1.1 113967 1gof 639 44.36 2ft6A 124 44.44 1k3iA 656 44.68 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1d3cA 686 44.99 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 1j58A 385 46.13 b.82.1.2 71531 4kbpA 432 48.89 b.1.12.1,d.159.1.1 22345,42064 1r0uA 148 49.07 b.60.1.5 96741 1np1A 184 51.06 b.60.1.1 27155 2q86A 229 51.34 2uurA 245 52.06 2ccwA 129 55.12 b.6.1.1 130259 1xb3A 128 55.52 b.6.1.1 115060 1hd5A 213 56.56 b.52.1.1 26896 2cxyA 125 57.34 2eng 210 57.40 1azrA 128 58.94 b.6.1.1 22983 1b69A 69 59.66 d.10.1.1 37479 1n5nA 180 59.99 d.167.1.1 85336 2h6bA 250 60.67 1p4uA 153 61.11 b.1.10.2 87780 1yqfA 203 61.91 d.25.1.1 123880 1cuoA 129 64.13 b.6.1.1 23015 1k3xA 262 64.38 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1dkzA 219 64.92 a.8.4.1,b.130.1.1 90345,90346 1ifrA 121 65.53 b.1.16.1 71203 1f42A 306 66.83 b.1.1.4,b.1.2.1,b.1.2.1 59636,59637,59638 1dkxA 219 66.95 a.8.4.1,b.130.1.1 90339,90340 1w9aA 147 69.37 b.45.1.1 114408 1bb8A 71 69.75 d.10.1.1 37478 1yer 228 69.95 1k12A 158 70.49 b.18.1.15 71978 2sakA 121 70.52 d.15.5.1 37711 1c3oB 382 72.08 c.8.3.1,c.23.16.1 30744,31421 1ig6A 107 72.40 a.4.3.1 62364 1ag0A 129 73.18 b.6.1.1 23001 1bihA 395 73.31 b.1.1.4,b.1.1.4,b.1.1.4,b.1.1.4 21752,21753,21754,21755 1cmyB 146 73.31 a.1.1.2 15544 1gvhA 396 74.45 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 2inbA 140 74.87 2hzqA 174 75.41 1jsuC 84 77.89 j.55.1.1 46339 1rl4A 188 77.91 d.167.1.1 97636 2a15A 139 78.21 d.17.4.3 125973 2d5xB 146 80.08 a.1.1.2 131283 1jsdA 319 81.35 b.19.1.2 63258 5gcnA 166 81.77 d.108.1.1 40807 1yxaA 398 82.51 1gmuA 143 87.96 b.107.1.1,d.58.38.1 65335,65336 1m3iA 471 88.56 f.9.1.1 91178 1fnf 368 89.33 2nw2A 200 89.54