# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1bf4A 63 0.1746 b.34.13.1 37461 1bnzA 64 0.2319 b.34.13.1 37468 1xyiA 66 0.3430 1azpA 66 0.3646 b.34.13.1 37467 1c8cA 64 0.5643 b.34.13.1 59084 2eisA 133 2.259 3bduA 62 2.757 1pfoA 500 3.365 f.9.1.1 43826 2rftA 344 5.087 2jfrA 234 5.124 1bbxC 63 5.152 b.34.13.1 37465 1yliA 153 5.395 d.38.1.1 123651 2uurA 245 5.424 2viuA 328 5.913 b.19.1.2 23797 1jsdA 319 6.444 b.19.1.2 63258 1gof 639 6.654 1jsmA 325 6.857 b.19.1.2 63264 1ogoX 574 7.168 b.133.1.1,b.80.1.10 92925,92926 1sjyA 159 7.295 d.113.1.1 98900 1v3yA 192 7.537 d.167.1.1 113508 2r78A 117 8.291 2q2bA 179 8.416 1aw7A 194 8.676 b.40.2.2,d.15.6.1 25164,37753 1gmuA 143 8.721 b.107.1.1,d.58.38.1 65335,65336 2jesA 503 8.926 1pfo 500 8.937 1hd5A 213 9.016 b.52.1.1 26896 3bjkA 153 9.915 1m3iA 471 10.36 f.9.1.1 91178 2eng 210 10.45 1l0qA 391 10.61 b.1.3.1,b.69.2.3 77644,77645 2ra2A 64 10.72 1sxvA 172 11.39 1jsuC 84 11.85 j.55.1.1 46339 1y6hA 177 12.07 d.167.1.1 116505 1v0aA 178 12.21 b.18.1.30 119815 1p4uA 153 12.35 b.1.10.2 87780 1r0uA 148 13.04 b.60.1.5 96741 1lmeA 176 13.82 d.167.1.1 84629 2inbA 140 13.82 2hzqA 174 13.89 2jn0A 61 14.28 1vpmA 169 14.81 d.38.1.1 113967 2o3oA 254 15.30 1td4A 115 15.63 b.85.2.1 112389 2v1oA 151 16.03 1yqfA 203 16.69 d.25.1.1 123880 1dkxA 219 17.82 a.8.4.1,b.130.1.1 90339,90340 1bb8 71 18.29 1te7A 103 18.33 b.122.1.7 112404 1ub4C 85 18.36 b.129.1.1 88401 1orvA 728 18.81 b.70.3.1,c.69.1.24 87354,87355 2sakA 121 19.06 d.15.5.1 37711 1lqwA 183 19.10 d.167.1.1 74210 1avaC 181 19.36 b.42.4.1 25604 1dkzA 219 19.47 a.8.4.1,b.130.1.1 90345,90346 1n5nA 180 19.94 d.167.1.1 85336 1g72A 573 20.55 b.70.1.1 27680 2rb6A 61 20.58 1lmhA 184 21.16 d.167.1.1 74036 2a15A 139 21.38 d.17.4.3 125973 1t61A 229 21.46 d.169.1.6,d.169.1.6 106529,106530 1s3rA 535 21.48 1li1A 229 22.46 d.169.1.6,d.169.1.6 73898,73899 1eg2A 319 22.54 c.66.1.11 34249 1g6nA 210 22.64 a.4.5.4,b.82.3.2 16100,28139 1a6pA 94 22.80 b.1.1.1 19748 1a64A 97 23.07 b.1.1.1 19750 1ts3A 194 23.30 b.40.2.2,d.15.6.1 25168,37757 2prdA 174 23.54 b.40.5.1 25435 1xeoA 168 23.88 d.167.1.1 121913 1bihA 395 24.67 b.1.1.4,b.1.1.4,b.1.1.4,b.1.1.4 21752,21753,21754,21755 1ckeA 227 24.92 c.37.1.1 31846 2os5A 119 25.01 2okfA 140 26.00 1jjoC 261 26.97 1r5lA 262 27.73 a.5.3.1,c.13.1.1 97099,97100 2cqsA 842 28.77 1yr2A 741 29.13 1k3iA 656 29.20 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1b69A 69 29.72 d.10.1.1 37479 1fbnA 230 29.86 c.66.1.3 34181 2gu3A 136 29.96 1np1A 184 30.59 b.60.1.1 27155 1earA 147 30.72 b.107.1.1,d.58.38.1 64875,64876 1cxqA 162 30.94 c.55.3.2 33621 1lu4A 136 31.79 c.47.1.10 91124 1bs4A 168 31.92 d.167.1.1 42287 1ca1A 370 32.15 a.124.1.1,b.12.1.3 19340,23648 1bdyA 123 32.36 b.7.1.1 23190 1ohpA 125 32.90 d.17.4.3 118702 2fwvA 226 33.42 2d5xB 146 35.79 a.1.1.2 131283 1ifrA 121 35.79 b.1.16.1 71203 2j82A 240 36.56 1aunA 208 36.78 b.25.1.1 23900 1dcjA 81 37.36 d.68.3.3 59115 1rl4A 188 39.20 d.167.1.1 97636 1iu1A 146 39.34 b.1.10.2 71428 1t61C 227 39.64 d.169.1.6,d.169.1.6 106533,106534 1je3A 97 40.87 d.68.3.3 71637 1uesA 191 41.39 a.2.11.1,d.44.1.1 107798,107799 1txoA 237 41.42 d.219.1.1 112781 2pezA 179 42.17 2yxmA 100 42.64 1gifA 115 45.29 d.80.1.3 39837 1dxtB 147 46.20 a.1.1.2 15450 1hgeA 328 46.46 b.19.1.2 23816 1mu5A 471 48.30 a.156.1.3,d.14.1.3,d.122.1.2 79472,79473,79474 1ec7A 446 48.39 c.1.11.2,d.54.1.1 29218,38862 2cm1A 260 48.80 1ocvA 125 48.90 d.17.4.3 86810 1j58A 385 49.05 b.82.1.2 71531 1a7nL 107 49.79 b.1.1.1 19940 2g3rA 123 49.84 b.34.9.1,b.34.9.1 134570,134571 1jdqA 98 50.01 d.68.3.3 66559 1uerA 191 50.10 a.2.11.1,d.44.1.1 107790,107791 8prkA 287 50.70 b.40.5.1 25395 1el6A 219 51.01 d.182.1.1 42606 1iwlA 182 51.09 b.125.1.1 83757 2cxyA 125 52.55 1o98A 511 53.31 c.105.1.1,c.76.1.3 86684,86685 2h6bA 250 53.54 2c60A 111 53.60 d.15.2.2 129966 1pm1X 180 53.60 b.60.1.1 104189 1hfoA 113 54.45 d.80.1.3 61006 1g8sA 230 55.45 c.66.1.3 90507 1dmmA 131 55.59 d.17.4.3 38114 2glwA 92 55.69 1bb8A 71 56.21 d.10.1.1 37478 2i09A 403 57.12 c.76.1.5,d.327.1.1 136946,136947 1xb3A 128 57.34 b.6.1.1 115060 1bsvA 321 57.81 c.2.1.2 29809 1u00A 227 57.86 a.8.4.1,b.130.1.1 112900,112901 2rbbA 141 58.15 1bwsA 321 58.20 c.2.1.2 29812 2prrA 197 58.39 3bp8C 75 59.05 1kb0A 677 59.17 a.3.1.6,b.70.1.1 68378,68379 1orc 71 60.09 1epwA 1290 60.25 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 4aahA 571 60.26 b.70.1.1 27678 1twlA 186 60.32 b.40.5.1 112764 1gcvB 136 60.56 a.1.1.2 15589 2au7A 175 61.84 2jmzA 186 62.25 1gcwB 135 63.09 a.1.1.2 15591 2oyoA 196 63.14 2z2nA 299 63.87 1fdrA 248 63.87 b.43.4.2,c.25.1.1 25653,31543 1k7gA 479 64.18 b.80.7.1,d.92.1.6 77279,77280 2gojA 197 64.34 3bjoA 103 64.51 1xj4A 119 64.86 d.110.3.2 122027 3bqxA 150 65.84 1j7xA 302 66.15 c.14.1.2 66425 1ig6A 107 66.35 a.4.3.1 62364 2cu1A 103 66.52 d.15.2.2 130802 2engA 210 66.69 b.52.1.1 26895 2ft6A 124 66.95 1e6uA 321 69.31 c.2.1.2 29805 1reoA 486 69.61 c.3.1.2,d.16.1.5 97325,97326 1azrA 128 70.22 b.6.1.1 22983 1cuoA 129 71.57 b.6.1.1 23015 1k3xA 262 73.45 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1q38A 89 73.82 b.1.2.1 95663 1lktA 104 75.33 b.90.1.1 28398 2nvgA 141 75.85 1yppA 286 76.34 b.40.5.1 25407 1acc 735 77.95 1nu5A 370 78.11 c.1.11.2,d.54.1.1 92183,92184 2dt8A 280 78.37 2ccwA 129 79.46 b.6.1.1 130259 2bf5A 98 79.61 d.137.1.1 128405 1d3cA 686 80.18 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 1s5uA 138 80.64 d.38.1.1 98573 2nybA 192 82.49 a.2.11.1,d.44.1.1 138804,138805 2qcuA 501 83.37 1v4xB 146 84.97 a.1.1.2 108364 1pbyB 337 86.32 b.69.2.2 94422 1a4fB 146 86.61 a.1.1.2 15573 2joeA 139 86.65 1qa9A 102 87.17 b.1.1.1 19742 1ag0A 129 87.24 b.6.1.1 23001 1a7pL 107 88.82 b.1.1.1 19950 1vhsA 175 89.00 d.108.1.1 100698 1xaoA 121 89.19