# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1bf4A 63 1.840 b.34.13.1 37461 1c8cA 64 2.535 b.34.13.1 59084 1bnzA 64 3.463 b.34.13.1 37468 1azpA 66 3.672 b.34.13.1 37467 1xyiA 66 4.032 1v3yA 192 5.216 d.167.1.1 113508 2rb6A 61 6.199 1bb8 71 6.973 2eisA 133 8.487 3bduA 62 8.970 1yliA 153 9.600 d.38.1.1 123651 2r78A 117 10.62 2q2bA 179 10.66 1g6nA 210 11.00 a.4.5.4,b.82.3.2 16100,28139 3bjkA 153 11.79 2jesA 503 13.50 1ec7A 446 14.50 c.1.11.2,d.54.1.1 29218,38862 1pfoA 500 14.51 f.9.1.1 43826 1cj3A 392 14.53 c.3.1.2,d.16.1.2 30347,37878 1lmhA 184 16.14 d.167.1.1 74036 2uurA 245 16.39 2cxyA 125 16.86 1lqwA 183 17.20 d.167.1.1 74210 2jfrA 234 17.22 1je3A 97 17.23 d.68.3.3 71637 1r0uA 148 17.44 b.60.1.5 96741 1v0aA 178 18.79 b.18.1.30 119815 1bb8A 71 19.19 d.10.1.1 37478 2v1oA 151 20.02 1bbxC 63 20.13 b.34.13.1 37465 1y6hA 177 20.45 d.167.1.1 116505 1aunA 208 21.10 b.25.1.1 23900 1b69A 69 22.33 d.10.1.1 37479 1p4uA 153 25.10 b.1.10.2 87780 1lmeA 176 25.89 d.167.1.1 84629 1hd5A 213 29.72 b.52.1.1 26896 1d3cA 686 30.25 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 2o3oA 254 30.94 1pfo 500 32.00 2inbA 140 32.48 1n5nA 180 33.70 d.167.1.1 85336 2eng 210 34.46 1vpmA 169 35.95 d.38.1.1 113967 2jn0A 61 36.92 1bihA 395 41.05 b.1.1.4,b.1.1.4,b.1.1.4,b.1.1.4 21752,21753,21754,21755 2gu3A 136 42.27 1dtgA 334 43.07 c.94.1.2 35896 1gmuA 143 46.22 b.107.1.1,d.58.38.1 65335,65336 2j82A 240 46.62 1orc 71 46.88 1jdqA 98 47.44 d.68.3.3 66559 1a64A 97 48.54 b.1.1.1 19750 1k3xA 262 49.43 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1l0qA 391 50.12 b.1.3.1,b.69.2.3 77644,77645 1txoA 237 54.02 d.219.1.1 112781 2aieP 203 54.92 2cm1A 260 56.24 1m3iA 471 56.46 f.9.1.1 91178 1gof 639 56.46 1fbnA 230 56.46 c.66.1.3 34181 1aw7A 194 57.83 b.40.2.2,d.15.6.1 25164,37753 2hzqA 174 59.64 1rl4A 188 60.40 d.167.1.1 97636 1xj4A 119 61.19 d.110.3.2 122027 1lu4A 136 62.69 c.47.1.10 91124 1rlwA 126 62.97 b.7.1.1 23177 1cf7A 76 63.16 a.4.5.17 16151 1w9aA 147 63.63 b.45.1.1 114408 2d5xB 146 64.73 a.1.1.2 131283 1iu1A 146 65.24 b.1.10.2 71428 1xeoA 168 66.00 d.167.1.1 121913 1wmdA 434 66.82 b.18.1.20,c.41.1.1 109408,109409 2i0oA 304 67.33 1yqfA 203 68.52 d.25.1.1 123880 1eg2A 319 69.01 c.66.1.11 34249 1dkzA 219 70.35 a.8.4.1,b.130.1.1 90345,90346 1bs4A 168 71.18 d.167.1.1 42287 1mu5A 471 72.92 a.156.1.3,d.14.1.3,d.122.1.2 79472,79473,79474 2cqsA 842 73.24 1dkxA 219 73.49 a.8.4.1,b.130.1.1 90339,90340 2cb5A 453 74.47 d.3.1.1 37035 1uesA 191 75.35 a.2.11.1,d.44.1.1 107798,107799 1k3iA 656 76.18 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1ig6A 107 76.67 a.4.3.1 62364 2okfA 140 77.14 2a15A 139 78.37 d.17.4.3 125973 2rbbA 141 79.30 2h6bA 250 81.53 1v7wA 807 82.63 a.102.1.4,b.30.5.3 108411,108412 1td4A 115 83.03 b.85.2.1 112389 5croA 66 83.16 a.35.1.2 17044 1g8sA 230 86.01 c.66.1.3 90507 2yxmA 100 86.02 1sxvA 172 86.93