# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1bb8 71 3.976 1bf4A 63 5.155 b.34.13.1 37461 1v3yA 192 6.287 d.167.1.1 113508 1azpA 66 7.309 b.34.13.1 37467 1c8cA 64 7.350 b.34.13.1 59084 1bnzA 64 7.355 b.34.13.1 37468 1v0aA 178 8.058 b.18.1.30 119815 1xyiA 66 8.864 1yliA 153 9.676 d.38.1.1 123651 2q2bA 179 10.46 1bb8A 71 10.78 d.10.1.1 37478 2eisA 133 10.99 2v1oA 151 11.89 1b69A 69 11.89 d.10.1.1 37479 1pfoA 500 12.64 f.9.1.1 43826 3bjkA 153 13.16 2rb6A 61 13.66 1je3A 97 13.95 d.68.3.3 71637 1bbxC 63 14.46 b.34.13.1 37465 1g6nA 210 15.46 a.4.5.4,b.82.3.2 16100,28139 3bduA 62 18.28 1d3cA 686 18.29 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 2cxyA 125 19.49 2r78A 117 19.90 2cb5A 453 20.61 d.3.1.1 37035 1cj3A 392 21.13 c.3.1.2,d.16.1.2 30347,37878 1p4uA 153 21.68 b.1.10.2 87780 2eng 210 21.81 1hd5A 213 22.08 b.52.1.1 26896 1ec7A 446 25.17 c.1.11.2,d.54.1.1 29218,38862 2jesA 503 25.31 1aunA 208 26.49 b.25.1.1 23900 2cqsA 842 28.97 1y6hA 177 31.06 d.167.1.1 116505 1lqwA 183 31.57 d.167.1.1 74210 2jfrA 234 32.12 1lmhA 184 33.07 d.167.1.1 74036 1pfo 500 35.07 1f0cA 305 35.20 e.1.1.1 42676 1wmdA 434 36.68 b.18.1.20,c.41.1.1 109408,109409 2uurA 245 36.69 1jdqA 98 37.45 d.68.3.3 66559 1dtgA 334 38.30 c.94.1.2 35896 1r0uA 148 40.70 b.60.1.5 96741 2inbA 140 41.38 1eg2A 319 42.39 c.66.1.11 34249 1rlwA 126 42.51 b.7.1.1 23177 1mu5A 471 42.63 a.156.1.3,d.14.1.3,d.122.1.2 79472,79473,79474 1vpmA 169 42.86 d.38.1.1 113967 1cf7A 76 43.48 a.4.5.17 16151 1jjoC 261 50.02 1fbnA 230 50.16 c.66.1.3 34181 3b7kA 333 51.81 1gmuA 143 52.73 b.107.1.1,d.58.38.1 65335,65336 1sxvA 172 54.59 1rowA 109 56.16 b.1.11.2 97676 1n5nA 180 57.79 d.167.1.1 85336 1avaC 181 62.76 b.42.4.1 25604 1ogoX 574 63.66 b.133.1.1,b.80.1.10 92925,92926 1sy6A 204 64.07 b.1.1.4,b.1.1.4 106111,106112 1iu1A 146 66.43 b.1.10.2 71428 2j82A 240 66.66 1x3eA 165 66.72 1lmeA 176 68.18 d.167.1.1 84629 1dkzA 219 70.19 a.8.4.1,b.130.1.1 90345,90346 2d5xB 146 70.23 a.1.1.2 131283 1orc 71 71.80 1jsuC 84 72.80 j.55.1.1 46339 2yxmA 100 73.08 1bsvA 321 73.40 c.2.1.2 29809 1e6uA 321 74.58 c.2.1.2 29805 1dkxA 219 75.55 a.8.4.1,b.130.1.1 90339,90340 1pm1X 180 78.53 b.60.1.1 104189 1aw7A 194 79.35 b.40.2.2,d.15.6.1 25164,37753 1a64A 97 79.62 b.1.1.1 19750 2okfA 140 80.76 2q7nA 488 80.82 1gof 639 81.15 1bwsA 321 82.67 c.2.1.2 29812 1l0qA 391 83.73 b.1.3.1,b.69.2.3 77644,77645 1k3xA 262 83.95 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1j0sA 157 85.42 b.42.1.2 90747 2o3oA 254 85.73 4kbpA 432 85.82 b.1.12.1,d.159.1.1 22345,42064 2ic2A 115 86.69 b.1.2.1 137233 1ygyA 529 86.89 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153