# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1bf4A 63 6.567 b.34.13.1 37461 1bb8 71 6.981 1v3yA 192 8.413 d.167.1.1 113508 1yliA 153 8.605 d.38.1.1 123651 1c8cA 64 8.763 b.34.13.1 59084 2q2bA 179 9.298 2eisA 133 9.920 1v0aA 178 10.42 b.18.1.30 119815 1azpA 66 11.50 b.34.13.1 37467 1bnzA 64 12.09 b.34.13.1 37468 3bjkA 153 13.58 2v1oA 151 15.11 1xyiA 66 15.68 2cxyA 125 16.35 1b69A 69 17.80 d.10.1.1 37479 1je3A 97 18.70 d.68.3.3 71637 2rb6A 61 19.08 3bduA 62 19.48 1g6nA 210 19.51 a.4.5.4,b.82.3.2 16100,28139 1bb8A 71 19.55 d.10.1.1 37478 2jfrA 234 20.23 1pfoA 500 20.85 f.9.1.1 43826 1bbxC 63 23.63 b.34.13.1 37465 1d3cA 686 26.15 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 1hd5A 213 29.67 b.52.1.1 26896 2eng 210 30.71 2r78A 117 31.21 1cf7A 76 32.74 a.4.5.17 16151 1cj3A 392 33.12 c.3.1.2,d.16.1.2 30347,37878 2jesA 503 33.81 1lqwA 183 34.18 d.167.1.1 74210 1ec7A 446 35.19 c.1.11.2,d.54.1.1 29218,38862 1s3aA 102 37.26 c.47.1.22 118847 1y6hA 177 38.23 d.167.1.1 116505 1lmhA 184 38.55 d.167.1.1 74036 1vpmA 169 40.48 d.38.1.1 113967 2inbA 140 40.87 2j82A 240 42.12 1p4uA 153 42.42 b.1.10.2 87780 1jdqA 98 44.21 d.68.3.3 66559 1aunA 208 44.81 b.25.1.1 23900 1fbnA 230 45.39 c.66.1.3 34181 2cqsA 842 45.45 1f0cA 305 51.08 e.1.1.1 42676 2uurA 245 52.38 2cb5A 453 52.46 d.3.1.1 37035 1eg2A 319 52.63 c.66.1.11 34249 2d5xB 146 56.99 a.1.1.2 131283 3b7kA 333 57.17 1mu5A 471 57.26 a.156.1.3,d.14.1.3,d.122.1.2 79472,79473,79474 1r0uA 148 62.31 b.60.1.5 96741 1wmdA 434 63.00 b.18.1.20,c.41.1.1 109408,109409 1ogoX 574 63.24 b.133.1.1,b.80.1.10 92925,92926 1rlwA 126 63.47 b.7.1.1 23177 2yxmA 100 64.98 1pfo 500 65.12 1rowA 109 65.44 b.1.11.2 97676 2i0oA 304 66.04 1gmuA 143 66.81 b.107.1.1,d.58.38.1 65335,65336 1ygyA 529 67.21 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1lmeA 176 68.49 d.167.1.1 84629 1n5nA 180 69.89 d.167.1.1 85336 1txoA 237 70.78 d.219.1.1 112781 1dtgA 334 71.14 c.94.1.2 35896 1e6uA 321 71.58 c.2.1.2 29805 2cm1A 260 72.87 1jjoC 261 73.98 1bsvA 321 74.58 c.2.1.2 29809 1dkzA 219 75.02 a.8.4.1,b.130.1.1 90345,90346 1uhgA 385 76.65 e.1.1.1 88491 1bwsA 321 76.70 c.2.1.2 29812 1sxvA 172 77.48 1dkxA 219 78.12 a.8.4.1,b.130.1.1 90339,90340 1l0qA 391 78.83 b.1.3.1,b.69.2.3 77644,77645 1orc 71 80.99 2okfA 140 81.36 1avaC 181 81.51 b.42.4.1 25604 2nr7A 195 86.52 2o3oA 254 88.41 1sy6A 204 88.66 b.1.1.4,b.1.1.4 106111,106112 1pm1X 180 89.98 b.60.1.1 104189 1g8sA 230 90.00 c.66.1.3 90507