# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1xyiA	66	1.777		
1azpA	66	2.100	b.34.13.1	37467
1c8cA	64	2.377	b.34.13.1	59084
1bbxC	63	2.610	b.34.13.1	37465
1bf4A	63	2.738	b.34.13.1	37461
1bnzA	64	3.215	b.34.13.1	37468
1yliA	153	4.276	d.38.1.1	123651
2eisA	133	5.427		
1bqk	124	6.404		
3bjkA	153	7.323		
2q2bA	179	8.556		
2v1oA	151	11.92		
1ig6A	107	12.10	a.4.3.1	62364
1fbnA	230	14.68	c.66.1.3	34181
1adwA	123	16.32	b.6.1.1	22893
1dcjA	81	17.14	d.68.3.3	59115
2r78A	117	18.45		
1sg7A	96	23.62	a.239.1.1	118961
1sy3A	184	23.75	b.60.1.1	106110
3bduA	62	27.44		
1a41A	234	30.43	d.163.1.2	42174
1ye8A	178	30.76	c.37.1.11	123010
2oyoA	196	33.90		
2pfxA	191	36.10		
1cf7A	76	37.35	a.4.5.17	16151
1vpmA	169	38.41	d.38.1.1	113967
1np1A	184	38.72	b.60.1.1	27155
2cqsA	842	39.63		
2hzqA	174	41.52		
2r77A	205	41.52		
2rb6A	61	41.87		
2ahmA	88	42.06	a.8.9.1	126760
1dr9A	201	43.01	b.1.1.1,b.1.1.3	19762,21684
1ckeA	227	45.10	c.37.1.1	31846
2yxeA	215	49.93		
2cm1A	260	50.53		
2prrA	197	51.73		
1je3A	97	52.05	d.68.3.3	71637
2aynA	404	52.15	d.3.1.9	127563
2dtr	226	52.82		
2iyvA	184	54.78	c.37.1.2	137812
1g8sA	230	58.61	c.66.1.3	90507
1v3yA	192	59.23	d.167.1.1	113508
2c60A	111	60.46	d.15.2.2	129966
2ikbA	167	60.47		
1g2rA	100	62.14	d.192.1.1	60231
1jdqA	98	64.04	d.68.3.3	66559
1a6pA	94	66.24	b.1.1.1	19748
1lqwA	183	67.54	d.167.1.1	74210
2z1cA	75	67.87		
1txoA	237	69.34	d.219.1.1	112781
3bn8A	128	69.46		
1r0uA	148	70.46	b.60.1.5	96741
2fnbA	95	73.31	b.1.2.1	21979
1ln4A	104	75.12	d.68.4.1	74043
2cxyA	125	75.34		
1gifA	115	76.34	d.80.1.3	39837
2iidA	498	79.00	c.3.1.2,d.16.1.5	137426,137427
1hfoA	113	79.57	d.80.1.3	61006
1x75A	132	79.70		
2jfrA	234	79.77		
1o7zA	77	80.01	d.9.1.1	86660
2sakA	121	80.03	d.15.5.1	37711
2os5A	119	80.14		
1lmhA	184	80.41	d.167.1.1	74036
1a64A	97	81.85	b.1.1.1	19750
1x8qA	184	81.88	b.60.1.1	114966
1yeyA	444	86.03	c.1.11.2,d.54.1.1	116664,116665
2pa8L	92	86.39