# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1bf4A 63 1.516 b.34.13.1 37461 1bnzA 64 1.813 b.34.13.1 37468 1azpA 66 3.054 b.34.13.1 37467 1c8cA 64 3.529 b.34.13.1 59084 1xyiA 66 4.059 1bb8 71 4.545 2eisA 133 5.306 2rb6A 61 5.321 1v3yA 192 5.891 d.167.1.1 113508 3bduA 62 6.415 1bbxC 63 6.817 b.34.13.1 37465 1g6nA 210 7.050 a.4.5.4,b.82.3.2 16100,28139 1yliA 153 9.327 d.38.1.1 123651 2jfrA 234 11.08 2r78A 117 11.46 1bb8A 71 11.50 d.10.1.1 37478 1pfoA 500 14.17 f.9.1.1 43826 1b69A 69 14.18 d.10.1.1 37479 3bjkA 153 14.89 2q2bA 179 15.40 1je3A 97 16.56 d.68.3.3 71637 2uurA 245 17.10 1ec7A 446 17.81 c.1.11.2,d.54.1.1 29218,38862 1p4uA 153 17.90 b.1.10.2 87780 1cj3A 392 19.25 c.3.1.2,d.16.1.2 30347,37878 1lmeA 176 20.15 d.167.1.1 84629 1y6hA 177 20.94 d.167.1.1 116505 2o3oA 254 21.27 1lqwA 183 22.56 d.167.1.1 74210 1lmhA 184 23.56 d.167.1.1 74036 2v1oA 151 25.55 1r0uA 148 27.15 b.60.1.5 96741 1d3cA 686 28.27 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 1aunA 208 29.03 b.25.1.1 23900 1v0aA 178 29.16 b.18.1.30 119815 2inbA 140 29.19 1n5nA 180 29.19 d.167.1.1 85336 1dtgA 334 30.89 c.94.1.2 35896 1vpmA 169 31.35 d.38.1.1 113967 2hzqA 174 31.97 1m3iA 471 33.97 f.9.1.1 91178 1pfo 500 34.80 1nu5A 370 35.12 c.1.11.2,d.54.1.1 92183,92184 2jn0A 61 35.66 1a6pA 94 35.78 b.1.1.1 19748 1a64A 97 36.04 b.1.1.1 19750 2jesA 503 36.20 1xeoA 168 39.99 d.167.1.1 121913 1rl4A 188 42.96 d.167.1.1 97636 2ra2A 64 43.99 1txoA 237 44.47 d.219.1.1 112781 2sakA 121 45.93 d.15.5.1 37711 2h6bA 250 46.69 2cm1A 260 46.95 1bihA 395 47.35 b.1.1.4,b.1.1.4,b.1.1.4,b.1.1.4 21752,21753,21754,21755 2a15A 139 48.19 d.17.4.3 125973 2i0oA 304 48.51 1jdqA 98 53.44 d.68.3.3 66559 1iu1A 146 54.65 b.1.10.2 71428 1bs4A 168 56.01 d.167.1.1 42287 1l0qA 391 56.78 b.1.3.1,b.69.2.3 77644,77645 2rbbA 141 57.26 1hd5A 213 58.35 b.52.1.1 26896 2j82A 240 58.35 2okfA 140 58.57 1jpcA 109 59.08 b.78.1.1 27986 1g72A 573 60.25 b.70.1.1 27680 1fbnA 230 62.66 c.66.1.3 34181 1cxqA 162 63.60 c.55.3.2 33621 2eng 210 64.96 1k3xA 262 65.35 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1jsuC 84 66.10 j.55.1.1 46339 1lu4A 136 66.52 c.47.1.10 91124 1xx4A 261 66.69 c.14.1.3 116138 1gmuA 143 68.51 b.107.1.1,d.58.38.1 65335,65336 1dkxA 219 68.54 a.8.4.1,b.130.1.1 90339,90340 2d5xB 146 69.04 a.1.1.2 131283 1mucA 373 69.75 c.1.11.2,d.54.1.1 29236,38880 2vl6A 268 76.27 1a41A 234 76.95 d.163.1.2 42174 1np1A 184 78.50 b.60.1.1 27155 1bqk 124 79.40 1cf7A 76 81.35 a.4.5.17 16151 1pm1X 180 81.43 b.60.1.1 104189 1sg4A 260 81.78 c.14.1.3 118957 1yqfA 203 82.11 d.25.1.1 123880 1sxvA 172 84.03 1uesA 191 85.58 a.2.11.1,d.44.1.1 107798,107799 2os5A 119 87.35 1td4A 115 87.95 b.85.2.1 112389 1zybA 232 88.10 a.4.5.4,b.82.3.2 125815,125816 2cb5A 453 89.04 d.3.1.1 37035 1ryoA 327 89.17 c.94.1.2 98108 1orc 71 89.21 1dkzA 219 89.57 a.8.4.1,b.130.1.1 90345,90346 2dpfA 115 89.59