# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1bf4A 63 0.5195 b.34.13.1 37461 1xyiA 66 2.591 2hq6A 185 3.556 1yliA 153 3.782 d.38.1.1 123651 1xfuA 747 4.893 1v3yA 192 5.049 d.167.1.1 113508 2eisA 133 5.482 2eng 210 5.516 1m3iA 471 5.808 f.9.1.1 91178 1bnzA 64 7.336 b.34.13.1 37468 3c5mA 396 9.181 2halA 212 9.502 b.47.1.4 136289 1b69A 69 9.851 d.10.1.1 37479 1bb8 71 10.24 1azpA 66 10.82 b.34.13.1 37467 1je3A 97 11.58 d.68.3.3 71637 1cj3A 392 12.17 c.3.1.2,d.16.1.2 30347,37878 1v1pA 211 12.51 b.40.2.2,d.15.6.1 108268,108269 2v3zA 440 12.80 1h2kA 349 16.11 b.82.2.6 76572 1fnf 368 16.68 2a6vA 226 16.86 b.29.1.13 126312 1aunA 208 17.46 b.25.1.1 23900 1bb8A 71 17.47 d.10.1.1 37478 2jfrA 234 18.87 1mrgA 263 18.92 d.165.1.1 42183 1ec7A 446 18.97 c.1.11.2,d.54.1.1 29218,38862 1lmeA 176 20.77 d.167.1.1 84629 2rb6A 61 21.16 2uvkA 357 22.42 2gnqA 336 22.78 1bbxC 63 23.15 b.34.13.1 37465 1hk8A 605 23.15 c.7.1.3 83540 1dcjA 81 24.33 d.68.3.3 59115 2absA 383 24.34 c.72.1.1 126534 1juhA 350 24.93 b.82.1.5 71884 3bduA 62 25.14 3buuA 229 25.62 1v0aA 178 25.91 b.18.1.30 119815 1vpmA 169 27.42 d.38.1.1 113967 1y6hA 177 27.70 d.167.1.1 116505 2qo3A 915 27.88 1zd7A 159 27.98 1g6nA 210 29.02 a.4.5.4,b.82.3.2 16100,28139 1n5nA 180 29.77 d.167.1.1 85336 1c8cA 64 29.91 b.34.13.1 59084 2nn6B 249 30.19 2o3oA 254 31.08 1ncwL 219 33.91 b.1.1.1,b.1.1.2 85557,85558 1s3rA 535 34.26 1sxvA 172 35.06 2q0dA 353 35.51 2q2bA 179 36.05 1t3bA 211 37.72 c.47.1.9,d.17.3.1 106341,106342 1fybA 111 37.80 g.69.1.1,g.69.1.1 44726,44727 2fnbA 95 38.19 b.1.2.1 21979 1pbyB 337 38.56 b.69.2.2 94422 1lqwA 183 38.57 d.167.1.1 74210 1a31A 538 39.94 d.163.1.2,e.15.1.1 42170,43263 1xfxA 777 40.13 2blrA 206 40.63 b.25.1.1 128741 3b5lB 198 40.84 1cb8A 678 43.61 a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 1exrA 148 44.55 a.39.1.5 17299 2imjA 166 45.47 1xiyA 182 47.67 c.47.1.10 122022 1vq0A 302 47.92 d.193.1.1,g.81.1.1 114000,114001 2oyoA 196 49.77 1uy4A 145 50.13 b.18.1.10 108131 1np1A 184 50.77 b.60.1.1 27155 1dr9A 201 51.19 b.1.1.1,b.1.1.3 19762,21684 1se8A 301 51.96 b.40.4.3 105448 1l0qA 391 52.28 b.1.3.1,b.69.2.3 77644,77645 1l1nA 183 52.79 b.47.1.4 73476 1uhnA 189 52.90 a.39.1.5 99399 2cgpA 210 53.03 a.4.5.4,b.82.3.2 16102,28141 1xx4A 261 55.22 c.14.1.3 116138 1fepA 724 56.01 f.4.3.3 43808 1a35A 538 57.45 d.163.1.2,e.15.1.1 42171,43264 1fukA 165 58.25 c.37.1.19 32409 2pezA 179 58.51 1lmhA 184 58.83 d.167.1.1 74036 1r5lA 262 59.99 a.5.3.1,c.13.1.1 97099,97100 1hpwA 129 60.79 d.24.1.1 61118 2j82A 240 60.81 1ccwB 483 61.05 c.1.19.2 29646 1gy8A 397 62.28 c.2.1.2 83376 2aouA 292 64.00 c.66.1.19 127100 1xwvA 129 64.38 b.1.18.7 116134 2engA 210 68.01 b.52.1.1 26895 2vktA 289 68.16 2i0oA 304 69.31 2r78A 117 72.52 2f1cX 286 76.20 2al6A 375 76.46 a.11.2.1,b.55.1.5,d.15.1.4 126966,126967,126968 1mzeA 351 77.34 b.82.2.6 79694 1bs4A 168 78.59 d.167.1.1 42287 1f1zA 273 79.77 a.4.5.27,c.52.1.16 16081,33334 1xyfA 436 80.64 b.42.2.1,c.1.8.3 25577,28909 1tz7A 505 80.77 c.1.8.1 119394 1mroB 442 81.34 a.89.1.1,d.58.31.2 18531,39449 2inbA 140 81.58 1a36A 592 81.73 a.2.8.1,d.163.1.2,e.15.1.1 15715,42173,43266 2h6bA 250 81.92 1jsdA 319 81.95 b.19.1.2 63258 2r00A 336 82.36 2hw2A 143 84.06 1xezA 721 84.97 1dtyA 429 85.60 c.67.1.4 34495 1wcdJ 441 85.69 b.121.4.9 120887 3b7fA 394 86.20 1atg 231 86.40 1wc2A 181 87.20 2j04B 524 89.26 1bqk 124 89.34 1yer 228 89.37