# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1bf4A 63 3.082 b.34.13.1 37461 1bnzA 64 3.814 b.34.13.1 37468 1bb8 71 4.949 1azpA 66 5.181 b.34.13.1 37467 1yliA 153 5.704 d.38.1.1 123651 2eisA 133 6.145 1xyiA 66 6.379 1c8cA 64 7.924 b.34.13.1 59084 1g6nA 210 7.970 a.4.5.4,b.82.3.2 16100,28139 1v3yA 192 8.061 d.167.1.1 113508 3bjkA 153 9.584 2jfrA 234 10.41 1pfoA 500 11.10 f.9.1.1 43826 1v0aA 178 11.47 b.18.1.30 119815 1b69A 69 12.31 d.10.1.1 37479 3bduA 62 12.81 1d3cA 686 13.40 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 1bb8A 71 13.45 d.10.1.1 37478 1ec7A 446 13.56 c.1.11.2,d.54.1.1 29218,38862 1je3A 97 15.27 d.68.3.3 71637 2rb6A 61 15.96 1cj3A 392 17.56 c.3.1.2,d.16.1.2 30347,37878 2v1oA 151 17.88 2q2bA 179 17.97 1bbxC 63 18.15 b.34.13.1 37465 1dtgA 334 20.10 c.94.1.2 35896 1vpmA 169 26.30 d.38.1.1 113967 2r78A 117 29.72 1hd5A 213 30.20 b.52.1.1 26896 1pfo 500 31.39 2eng 210 32.27 1y6hA 177 32.29 d.167.1.1 116505 1p4uA 153 36.64 b.1.10.2 87780 1lmeA 176 36.75 d.167.1.1 84629 1nu5A 370 39.20 c.1.11.2,d.54.1.1 92183,92184 1lqwA 183 39.42 d.167.1.1 74210 2j82A 240 40.29 1lmhA 184 41.55 d.167.1.1 74036 2uurA 245 43.14 2inbA 140 43.30 1rlwA 126 43.32 b.7.1.1 23177 1jdqA 98 45.12 d.68.3.3 66559 1n5nA 180 45.81 d.167.1.1 85336 2cqsA 842 45.97 2jesA 503 47.08 2o3oA 254 48.05 1bihA 395 50.37 b.1.1.4,b.1.1.4,b.1.1.4,b.1.1.4 21752,21753,21754,21755 2d5xB 146 53.17 a.1.1.2 131283 1aunA 208 53.43 b.25.1.1 23900 1jsuC 84 54.08 j.55.1.1 46339 1ygyA 529 54.82 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2cm1A 260 54.85 1l0qA 391 55.52 b.1.3.1,b.69.2.3 77644,77645 1txoA 237 57.51 d.219.1.1 112781 1r0uA 148 57.55 b.60.1.5 96741 1td4A 115 58.10 b.85.2.1 112389 1ogoX 574 61.94 b.133.1.1,b.80.1.10 92925,92926 1fbnA 230 62.36 c.66.1.3 34181 1fo9A 348 64.61 c.68.1.10 59928 1foaA 348 65.27 c.68.1.10 59929 1f0cA 305 65.52 e.1.1.1 42676 2cb5A 453 67.12 d.3.1.1 37035 1ryoA 327 67.85 c.94.1.2 98108 1m3iA 471 67.96 f.9.1.1 91178 1sxvA 172 72.73 2os5A 119 74.95 1a8e 329 76.63 2vl6A 268 78.07 1mucA 373 78.13 c.1.11.2,d.54.1.1 29236,38880 1wmdA 434 79.45 b.18.1.20,c.41.1.1 109408,109409 1jsdA 319 80.10 b.19.1.2 63258 1xeoA 168 80.68 d.167.1.1 121913 1dkxA 219 81.14 a.8.4.1,b.130.1.1 90339,90340 1rl4A 188 81.96 d.167.1.1 97636 1avaC 181 82.02 b.42.4.1 25604 1g72A 573 82.62 b.70.1.1 27680 1zybA 232 83.92 a.4.5.4,b.82.3.2 125815,125816 1rowA 109 84.26 b.1.11.2 97676 1jjoC 261 84.41 1ltlA 279 85.68 b.40.4.11 84701 1b3eA 330 86.75 c.94.1.2 35897 2okfA 140 87.40 1mu5A 471 87.84 a.156.1.3,d.14.1.3,d.122.1.2 79472,79473,79474 1j0sA 157 88.19 b.42.1.2 90747 1cxqA 162 89.13 c.55.3.2 33621