# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1bf4A	63	8.215	b.34.13.1	37461
1bb8	71	8.327		
1bnzA	64	11.78	b.34.13.1	37468
1pfoA	500	13.96	f.9.1.1	43826
1c8cA	64	14.39	b.34.13.1	59084
1g6nA	210	15.15	a.4.5.4,b.82.3.2	16100,28139
1d3cA	686	15.51	b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1	21827,22496,27734,28721
1bbxC	63	18.17	b.34.13.1	37465
1xyiA	66	19.04		
1v3yA	192	19.34	d.167.1.1	113508
1azpA	66	19.63	b.34.13.1	37467
1bb8A	71	19.97	d.10.1.1	37478
1v0aA	178	22.29	b.18.1.30	119815
1je3A	97	23.88	d.68.3.3	71637
1yliA	153	24.91	d.38.1.1	123651
1b69A	69	25.99	d.10.1.1	37479
2v1oA	151	26.66		
1cj3A	392	27.05	c.3.1.2,d.16.1.2	30347,37878
2cqsA	842	27.98		
2r78A	117	29.08		
2eisA	133	30.63		
1rlwA	126	32.25	b.7.1.1	23177
2jfrA	234	35.22		
2rb6A	61	36.69		
1aunA	208	37.51	b.25.1.1	23900
1f0cA	305	37.95	e.1.1.1	42676
2cb5A	453	43.77	d.3.1.1	37035
1pfo	500	43.82		
3bjkA	153	44.43		
1hd5A	213	45.36	b.52.1.1	26896
1s3aA	102	45.88	c.47.1.22	118847
1p4uA	153	46.96	b.1.10.2	87780
2q2bA	179	48.34		
2inbA	140	49.89		
2eng	210	51.60		
2j82A	240	53.03		
1aw7A	194	57.66	b.40.2.2,d.15.6.1	25164,37753
1jdqA	98	57.96	d.68.3.3	66559
1ec7A	446	59.07	c.1.11.2,d.54.1.1	29218,38862
2cxyA	125	59.39		
1eg2A	319	60.51	c.66.1.11	34249
1cf7A	76	62.26	a.4.5.17	16151
3bduA	62	65.04		
1jjoC	261	71.28		
1uhgA	385	73.32	e.1.1.1	88491
1lqwA	183	73.55	d.167.1.1	74210
1lmhA	184	74.62	d.167.1.1	74036
2i0oA	304	81.15		
1m3iA	471	81.37	f.9.1.1	91178
1r0uA	148	83.93	b.60.1.5	96741
1y6hA	177	86.55	d.167.1.1	116505
2d5xB	146	86.85	a.1.1.2	131283
1j0sA	157	88.01	b.42.1.2	90747
2c12A	439	88.16	a.29.3.1,e.6.1.1	129616,129617
2jesA	503	88.96