# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1bf4A 63 3.688 b.34.13.1 37461 1bnzA 64 4.260 b.34.13.1 37468 1pfoA 500 5.295 f.9.1.1 43826 1azpA 66 6.383 b.34.13.1 37467 1xyiA 66 6.598 1v3yA 192 7.375 d.167.1.1 113508 2eisA 133 7.917 1c8cA 64 8.976 b.34.13.1 59084 1g6nA 210 10.00 a.4.5.4,b.82.3.2 16100,28139 1bb8 71 11.63 1yliA 153 11.66 d.38.1.1 123651 1bbxC 63 13.92 b.34.13.1 37465 1pfo 500 14.10 2v1oA 151 15.53 3bduA 62 15.62 3bjkA 153 19.10 2rb6A 61 20.85 1v0aA 178 22.42 b.18.1.30 119815 1lqwA 183 22.56 d.167.1.1 74210 2q2bA 179 23.14 1lmhA 184 23.18 d.167.1.1 74036 2jfrA 234 23.78 1m3iA 471 24.04 f.9.1.1 91178 1y6hA 177 24.22 d.167.1.1 116505 1je3A 97 24.71 d.68.3.3 71637 1lmeA 176 29.38 d.167.1.1 84629 1r0uA 148 29.82 b.60.1.5 96741 2jesA 503 30.94 2inbA 140 32.51 1cf7A 76 34.05 a.4.5.17 16151 1cj3A 392 34.93 c.3.1.2,d.16.1.2 30347,37878 1b69A 69 35.15 d.10.1.1 37479 2r78A 117 37.18 1bb8A 71 39.45 d.10.1.1 37478 2uurA 245 40.24 1hd5A 213 40.53 b.52.1.1 26896 1jsuC 84 40.62 j.55.1.1 46339 1vpmA 169 40.93 d.38.1.1 113967 1jsdA 319 41.56 b.19.1.2 63258 2rftA 344 42.46 1fbnA 230 42.71 c.66.1.3 34181 1n5nA 180 43.93 d.167.1.1 85336 1jjoC 261 44.56 1jdqA 98 44.86 d.68.3.3 66559 2eng 210 46.54 1d3cA 686 46.67 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 2j82A 240 48.66 1dkxA 219 48.73 a.8.4.1,b.130.1.1 90339,90340 1s3rA 535 50.53 1eg2A 319 50.90 c.66.1.11 34249 1mu5A 471 51.45 a.156.1.3,d.14.1.3,d.122.1.2 79472,79473,79474 1avaC 181 51.99 b.42.4.1 25604 2viuA 328 52.63 b.19.1.2 23797 2cb5A 453 52.94 d.3.1.1 37035 1dtgA 334 53.22 c.94.1.2 35896 2d5xB 146 53.96 a.1.1.2 131283 1r5lA 262 54.12 a.5.3.1,c.13.1.1 97099,97100 1dkzA 219 54.47 a.8.4.1,b.130.1.1 90345,90346 1ec7A 446 55.47 c.1.11.2,d.54.1.1 29218,38862 1aunA 208 56.81 b.25.1.1 23900 1rl4A 188 59.64 d.167.1.1 97636 1p4uA 153 59.68 b.1.10.2 87780 1bs4A 168 59.87 d.167.1.1 42287 3hmgA 328 60.61 b.19.1.2 23825 1sjyA 159 61.98 d.113.1.1 98900 1aw7A 194 62.09 b.40.2.2,d.15.6.1 25164,37753 2okfA 140 65.18 1sxvA 172 65.82 2ra2A 64 65.92 1xeoA 168 66.29 d.167.1.1 121913 1orvA 728 67.73 b.70.3.1,c.69.1.24 87354,87355 2cxyA 125 68.87 2aieP 203 68.92 2o3oA 254 68.92 2iyvA 184 71.47 c.37.1.2 137812 1cmyB 146 71.62 a.1.1.2 15544 2jn0A 61 72.60 1td4A 115 72.90 b.85.2.1 112389 1ckeA 227 75.86 c.37.1.1 31846 2os5A 119 76.39 1dcjA 81 78.78 d.68.3.3 59115 1dxtB 147 79.21 a.1.1.2 15450 2cm1A 260 80.46 2hzqA 174 80.83 1ub4C 85 82.08 b.129.1.1 88401 1g8sA 230 82.99 c.66.1.3 90507 2sakA 121 83.63 d.15.5.1 37711 1jsmA 325 83.72 b.19.1.2 63264 1iu1A 146 84.14 b.1.10.2 71428 1f0cA 305 85.37 e.1.1.1 42676 1txoA 237 87.02 d.219.1.1 112781 1lu4A 136 87.68 c.47.1.10 91124 1rlwA 126 87.97 b.7.1.1 23177 2h6bA 250 88.48