# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1bf4A 63 1.815 b.34.13.1 37461 1bnzA 64 2.583 b.34.13.1 37468 1bbxC 63 2.753 b.34.13.1 37465 1bb8 71 5.146 1xyiA 66 5.611 1v3yA 192 6.554 d.167.1.1 113508 1c8cA 64 6.774 b.34.13.1 59084 1pfoA 500 6.922 f.9.1.1 43826 1azpA 66 7.116 b.34.13.1 37467 1g6nA 210 7.867 a.4.5.4,b.82.3.2 16100,28139 1v0aA 178 8.948 b.18.1.30 119815 2eisA 133 9.399 1yliA 153 10.53 d.38.1.1 123651 1b69A 69 11.42 d.10.1.1 37479 1je3A 97 14.68 d.68.3.3 71637 3bduA 62 14.79 1bb8A 71 15.24 d.10.1.1 37478 2inbA 140 15.45 1r0uA 148 17.64 b.60.1.5 96741 3bjkA 153 17.88 2jesA 503 18.60 2q2bA 179 18.89 2jfrA 234 19.16 2r78A 117 19.49 1pfo 500 20.08 1l0qA 391 21.15 b.1.3.1,b.69.2.3 77644,77645 2rb6A 61 21.91 1cj3A 392 23.37 c.3.1.2,d.16.1.2 30347,37878 2v1oA 151 23.83 1d3cA 686 24.57 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 1lmhA 184 25.52 d.167.1.1 74036 2uurA 245 26.94 1m3iA 471 27.36 f.9.1.1 91178 2o3oA 254 28.03 2eng 210 28.06 1lqwA 183 28.42 d.167.1.1 74210 1hd5A 213 29.06 b.52.1.1 26896 1rlwA 126 30.30 b.7.1.1 23177 2okfA 140 32.49 1jsuC 84 33.89 j.55.1.1 46339 1p4uA 153 36.83 b.1.10.2 87780 2cb5A 453 36.85 d.3.1.1 37035 1fbnA 230 37.71 c.66.1.3 34181 1aunA 208 38.19 b.25.1.1 23900 1y6hA 177 41.37 d.167.1.1 116505 1ub4C 85 41.87 b.129.1.1 88401 1jjoC 261 44.11 1g72A 573 44.22 b.70.1.1 27680 1jdqA 98 44.42 d.68.3.3 66559 1eg2A 319 44.80 c.66.1.11 34249 1vpmA 169 44.95 d.38.1.1 113967 1dtgA 334 45.42 c.94.1.2 35896 1lmeA 176 45.71 d.167.1.1 84629 2vl6A 268 45.72 1cf7A 76 47.48 a.4.5.17 16151 1r5lA 262 48.16 a.5.3.1,c.13.1.1 97099,97100 1rl4A 188 51.24 d.167.1.1 97636 1dkxA 219 51.37 a.8.4.1,b.130.1.1 90339,90340 1jsdA 319 51.71 b.19.1.2 63258 1s3rA 535 51.71 1n5nA 180 52.77 d.167.1.1 85336 1p94A 76 53.47 a.43.1.3 94380 1dkzA 219 53.71 a.8.4.1,b.130.1.1 90345,90346 1xeoA 168 53.76 d.167.1.1 121913 1gof 639 53.93 1sjyA 159 54.41 d.113.1.1 98900 1np1A 184 55.08 b.60.1.1 27155 1aw7A 194 55.53 b.40.2.2,d.15.6.1 25164,37753 1nu5A 370 56.24 c.1.11.2,d.54.1.1 92183,92184 2j82A 240 56.90 1bs4A 168 58.20 d.167.1.1 42287 1gmuA 143 60.81 b.107.1.1,d.58.38.1 65335,65336 1k3iA 656 63.96 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 2hzqA 174 68.26 2rftA 344 68.57 1ec7A 446 69.16 c.1.11.2,d.54.1.1 29218,38862 1td4A 115 69.66 b.85.2.1 112389 1dcjA 81 73.07 d.68.3.3 59115 2cqsA 842 73.71 2q7nA 488 74.59 1pm1X 180 75.94 b.60.1.1 104189 1sxvA 172 76.81 1a6pA 94 77.05 b.1.1.1 19748 2a15A 139 77.34 d.17.4.3 125973 1ltlA 279 77.82 b.40.4.11 84701 1g8sA 230 77.97 c.66.1.3 90507 1s3aA 102 78.99 c.47.1.22 118847 1txoA 237 79.51 d.219.1.1 112781 1iu1A 146 80.75 b.1.10.2 71428 2cm1A 260 83.28 3c5cA 187 85.96 2viuA 328 86.57 b.19.1.2 23797 2sakA 121 87.90 d.15.5.1 37711 1a3rH 218 87.97 b.1.1.1,b.1.1.2 19781,20891