# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1xyiA 66 1.738 1bf4A 63 2.258 b.34.13.1 37461 1bb8 71 2.336 2v1oA 151 2.538 1c8cA 64 2.734 b.34.13.1 59084 1azpA 66 3.188 b.34.13.1 37467 1bbxC 63 3.362 b.34.13.1 37465 1bb8A 71 3.720 d.10.1.1 37478 1yliA 153 3.904 d.38.1.1 123651 1a41A 234 4.416 d.163.1.2 42174 1bnzA 64 5.207 b.34.13.1 37468 2eisA 133 5.861 2q2bA 179 6.386 3bjkA 153 8.609 1b69A 69 9.137 d.10.1.1 37479 3bduA 62 10.47 3b8mA 280 11.74 1o7zA 77 13.04 d.9.1.1 86660 2i1b 153 15.54 1jjoC 261 20.04 1f0cA 305 21.22 e.1.1.1 42676 2cxyA 125 24.11 1lv9A 77 25.10 d.9.1.1 78233 2rb6A 61 25.59 2tnfA 156 27.63 b.22.1.1 23880 1ifrA 121 29.58 b.1.16.1 71203 1mr1C 99 31.06 d.217.1.2 79420 1vpmA 169 34.38 d.38.1.1 113967 2jn0A 61 35.12 3bpzA 202 35.21 1adwA 123 37.67 b.6.1.1 22893 2j6gA 266 37.76 1m8aA 70 37.99 d.9.1.1 74579 2vlgA 111 38.11 2c60A 111 39.52 d.15.2.2 129966 2o9uX 97 39.90 d.17.1.1 138960 1uebA 184 40.84 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 1zin 217 41.00 1tnfA 158 42.11 b.22.1.1 23871 3buuA 229 42.25 1dr9A 201 43.98 b.1.1.1,b.1.1.3 19762,21684 1mzbA 136 45.57 a.4.5.42 91497 3cewA 125 46.15 1sotA 320 48.05 b.36.1.4,b.47.1.1 105852,105853 1h2cA 140 48.70 b.31.1.1 83462 2bw2A 140 48.90 2aefA 234 50.25 1cf7A 76 51.20 a.4.5.17 16151 1yy6A 155 52.14 1tvxA 75 52.43 d.9.1.1 37441 1hpwA 129 54.15 d.24.1.1 61118 2oyoA 196 55.18 1dcjA 81 57.84 d.68.3.3 59115 1q38A 89 58.59 b.1.2.1 95663 1wgrA 100 59.01 d.15.1.5 114621 1xa0A 328 61.31 b.35.1.2,c.2.1.1 115021,115022 1sgpI 51 61.61 g.68.1.1 44678 2z1cA 75 63.27 2djaA 84 63.86 1fybA 111 67.37 g.69.1.1,g.69.1.1 44726,44727 2axyA 73 69.17 d.51.1.1 127532 2yxeA 215 69.45 1icwA 72 70.03 d.9.1.1 37357 1v66A 65 70.04 a.140.2.1 113543 1r0uA 148 75.31 b.60.1.5 96741 1a8mA 157 75.68 b.22.1.1 23868 1ye8A 178 75.70 c.37.1.11 123010 1adeA 431 76.91 c.37.1.10 32213 1molA 94 77.04 d.17.1.1 37988 1lt5D 103 78.48 b.40.2.1 24875 1lmeA 176 78.73 d.167.1.1 84629 2hzqA 174 79.50 2ptmA 198 81.54 3il8A 72 81.58 d.9.1.1 37356 1x6zA 123 82.52 d.24.1.1 121763 1f1zA 273 82.87 a.4.5.27,c.52.1.16 16081,33334 1ebmA 317 83.21 a.96.1.3,d.129.1.2 18751,41300 1m93B 245 83.50 1g2rA 100 84.18 d.192.1.1 60231 2inbA 140 84.37 1ll8A 114 84.84 d.110.3.5 78089 2q1mA 130 85.03 1maiA 131 85.34 b.55.1.1 26951 1u8sA 192 85.40 d.58.18.5,d.58.18.5 107737,107738 1je3A 97 85.62 d.68.3.3 71637 1u5xA 140 88.93 b.22.1.1 113055