# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1azpA	66	6.873	b.34.13.1	37467
1bf4A	63	6.988	b.34.13.1	37461
1xyiA	66	8.077		
1c8cA	64	8.729	b.34.13.1	59084
1bnzA	64	8.770	b.34.13.1	37468
1bb8	71	14.68		
2q2bA	179	15.56		
1bbxC	63	20.11	b.34.13.1	37465
1yeyA	444	24.24	c.1.11.2,d.54.1.1	116664,116665
2v1oA	151	28.78		
1yliA	153	29.98	d.38.1.1	123651
2eisA	133	36.26		
1je3A	97	36.74	d.68.3.3	71637
1bb8A	71	39.91	d.10.1.1	37478
2dtr	226	43.46		
2rb6A	61	46.17		
2e5vA	472	46.18		
3bjkA	153	46.85		
2g3aA	152	47.03	d.108.1.1	134557
1cj3A	392	52.16	c.3.1.2,d.16.1.2	30347,37878
2i0oA	304	54.77		
2j82A	240	60.64		
1b69A	69	60.73	d.10.1.1	37479
2h88A	621	61.59		
3bduA	62	61.82		
1jdqA	98	62.00	d.68.3.3	66559
1fbnA	230	66.44	c.66.1.3	34181
1orc	71	71.32		
1dcjA	81	71.57	d.68.3.3	59115
2jfrA	234	74.09		
1bqk	124	74.70		
2bryA	497	75.51		
2iyvA	184	83.53	c.37.1.2	137812
1g8sA	230	83.66	c.66.1.3	90507
2cm1A	260	84.47		
1nt2A	210	84.65	c.66.1.3	86149