# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1e79H 146 0.6999 a.2.10.1,b.93.1.1 15721,28438 1aqt 138 1.640 2e5yA 133 1.954 2qqrA 118 2.155 2z1cA 75 3.099 2hzqA 174 3.986 1bf4A 63 4.217 b.34.13.1 37461 1np1A 184 5.704 b.60.1.1 27155 1y6hA 177 6.202 d.167.1.1 116505 1xyiA 66 7.066 2e2dC 180 7.252 b.40.3.1 131980 1bnzA 64 7.978 b.34.13.1 37468 2aefA 234 9.404 1azpA 66 12.15 b.34.13.1 37467 1vcdA 126 12.18 d.113.1.1 119970 1c8cA 64 13.20 b.34.13.1 59084 1adwA 123 13.70 b.6.1.1 22893 1ifrA 121 14.41 b.1.16.1 71203 1sy3A 184 14.66 b.60.1.1 106110 2a19A 175 16.16 2gfaA 119 16.40 b.34.9.1,b.34.9.1 135089,135090 2bmoB 194 16.89 d.17.4.4 128806 3pviA 157 19.97 c.52.1.6 33300 2oqkA 117 20.69 1fjgL 135 20.78 b.40.4.5 25346 1br9 194 22.40 1ndoB 194 22.53 d.17.4.4 38121 1v3yA 192 25.25 d.167.1.1 113508 1nnwA 252 26.17 d.159.1.5 80674 1y7tA 327 28.17 c.2.1.5,d.162.1.1 122718,122719 1u8xX 472 28.52 c.2.1.5,d.162.1.2 107741,107742 2vqeL 135 29.88 1u69A 163 29.98 d.32.1.7 107699 1v1qA 134 30.80 b.40.4.3 113490 1mbyA 88 32.44 d.223.1.1 78931 1x8qA 184 32.59 b.60.1.1 114966 3bp1A 290 33.35 1xppA 115 34.39 d.74.3.2 115768 1o7kA 131 35.26 d.189.1.1 81144 1quqB 121 35.60 b.40.4.3 25305 1up7A 417 36.98 c.2.1.5,d.162.1.2 113374,113375 1bqk 124 37.12 2i5hA 205 37.43 2p0pA 126 37.43 1h8eH 146 37.60 b.93.1.1 60757 1vkkA 154 38.58 d.109.1.2 108669 1fs0E 138 38.88 a.2.10.1,b.93.1.1 59997,59998 1lci 550 39.37 1up6A 416 40.99 c.2.1.5,d.162.1.2 107976,107977 1kwaA 88 41.37 b.36.1.1 24772 1qpxA 218 42.38 b.1.11.1,b.7.2.1 22318,23200 1eg9B 194 43.39 d.17.4.4 38120 2pbcA 102 43.86 1mai 131 44.62 2pi2A 270 46.28 2it1A 362 46.28 1itwA 741 46.34 c.77.1.2 76793 1byqA 228 48.39 d.122.1.1 41100 1wocA 103 49.44 1sjyA 159 52.68 d.113.1.1 98900 1rl4A 188 56.59 d.167.1.1 97636 2uubL 135 57.04 b.40.4.5 139943 1jzgA 128 57.35 b.6.1.1 67855 1lmeA 176 60.18 d.167.1.1 84629 1maiA 131 60.63 b.55.1.1 26951 2hthB 140 61.57 b.55.1.12 136743 1o7nB 194 62.54 d.17.4.4 81164 2i75A 320 63.58 1xeoA 168 63.72 d.167.1.1 121913 3c5pA 197 65.37 3b93A 133 65.94 1d6mA 653 66.12 e.10.1.1 43248 1qppA 218 66.93 b.1.11.1,b.7.2.1 22320,23202 2ebeA 106 67.18 2p12A 176 67.87 1xx0A 127 68.60 b.55.1.1 122412 1bmdA 327 68.80 c.2.1.5,d.162.1.1 30139,42106 1u5fA 148 69.17 b.55.1.1 119542 1ou8A 111 69.40 b.136.1.1 93543 1molA 94 70.12 d.17.1.1 37988 2f5vA 595 70.82 c.3.1.2,d.16.1.1 133010,133011 2rcfA 91 71.61 1svy 114 71.76 1j1lA 290 72.28 b.82.1.12 90766 2gqpA 236 72.66 d.122.1.1 135513 1twfK 120 73.40 d.74.3.2 112736 1kq6A 141 74.12 d.189.1.1 91020 1hztA 190 74.71 d.113.1.2 61459 1d7qA 143 75.31 b.40.4.5 25331 2uyzB 79 76.87 d.15.1.1 140039 2i5tA 188 77.63 2aieP 203 77.85 1pm1X 180 77.87 b.60.1.1 104189 1cuoA 129 78.66 b.6.1.1 23015 1ca1 370 79.06 2pviA 157 80.00 c.52.1.6 33302 1qwdA 177 80.16 b.60.1.1 96471 1jmcA 246 80.53 b.40.4.3,b.40.4.3 25300,25301 2qkiC 343 84.82 2bqxA 173 85.85 2acoA 173 87.13 1l0qA 391 87.32 b.1.3.1,b.69.2.3 77644,77645 1lmhA 184 88.55 d.167.1.1 74036 1adeA 431 89.92 c.37.1.10 32213