# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1c8cA 64 0.3203 b.34.13.1 59084 1xyiA 66 0.5013 2z1cA 75 4.620 1bb8 71 5.124 1r5lA 262 5.886 a.5.3.1,c.13.1.1 97099,97100 1yliA 153 6.171 d.38.1.1 123651 1jmoA 480 8.091 e.1.1.1 77138 1bb8A 71 8.257 d.10.1.1 37478 1jsuC 84 8.926 j.55.1.1 46339 1vpmA 169 10.18 d.38.1.1 113967 2q2bA 179 10.94 1sxvA 172 13.79 2uurA 245 14.96 1vclA 432 16.53 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 3bduA 62 17.34 2ns6A 185 17.55 2ux0A 143 22.07 3bjkA 153 22.90 1quqB 121 22.92 b.40.4.3 25305 2bvlA 543 23.01 3bjoA 103 23.44 2if5A 120 23.99 2ra2A 64 24.72 2pi2E 142 26.29 1twlA 186 28.26 b.40.5.1 112764 2h4aA 325 28.31 2bqxA 173 28.36 2jesA 503 29.19 2eisA 133 29.38 1xj4A 119 32.55 d.110.3.2 122027 2arrA 382 32.64 2os5A 119 33.83 1p4uA 153 34.06 b.1.10.2 87780 1hkxA 147 34.12 d.17.4.7 83567 2uubE 162 35.31 d.14.1.1,d.50.1.2 139936,139937 1ulyA 192 38.62 a.4.5.58 113297 1jrrA 382 38.73 e.1.1.1 63256 1xaoA 121 39.36 1wm3A 72 40.12 d.15.1.1 114736 1dptA 117 40.36 d.80.1.3 39862 2jfrA 234 41.14 2geeA 203 41.29 1ofdA 1520 41.55 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 1gd0A 122 42.19 d.80.1.3 39834 2d7nA 93 42.26 b.1.18.10 131322 2gjgA 248 43.28 2vqeE 162 43.35 2a38A 194 43.71 2jdiH 146 46.71 a.2.10.1,b.93.1.1 138273,138274 1orc 71 49.38 2nqdB 221 50.87 1ut9A 609 50.91 a.102.1.2,b.1.18.2 99912,99913 2ak3A 226 57.77 c.37.1.1,g.41.2.1 31892,45193 1qfhA 212 58.38 b.1.18.10,b.1.18.10 21893,21894 2pv4A 145 59.48 1h6hA 143 60.22 d.189.1.1 65681 2sak 121 60.31 2sakA 121 60.31 d.15.5.1 37711 2p12A 176 62.25 1eysH 259 62.48 b.41.1.1,f.23.10.1 25484,43517 1vjyA 303 62.56 d.144.1.7 108633 2gdgA 114 63.83 d.80.1.3 135015 1wspA 84 64.12 2i44A 324 64.44 1o7iA 119 65.30 b.40.4.3 86642 1booA 323 66.09 c.66.1.11 34248 2pr5A 132 69.00 1nnwA 252 69.14 d.159.1.5 80674 1wkbA 810 69.28 2fwtA 125 69.38 3ckmA 327 69.91 1hfoA 113 70.05 d.80.1.3 61006 1ew0A 130 71.05 d.110.3.2 40905 1nr3A 122 71.08 d.236.1.1 86092 1earA 147 72.30 b.107.1.1,d.58.38.1 64875,64876 2aukA 190 73.55 3bpkA 206 76.10 2o0jA 385 76.66 1t2wA 145 77.42 b.100.1.1 106289 1pfoA 500 78.50 f.9.1.1 43826 2glwA 92 78.73 1pfo 500 78.84 1uesA 191 79.45 a.2.11.1,d.44.1.1 107798,107799 1j58A 385 80.00 b.82.1.2 71531 1i40A 175 82.34 b.40.5.1 66024 2ddzA 190 83.51 3c8mA 331 83.89 1rf6A 427 83.96 d.68.2.2 97366 2a13A 166 84.21 b.60.1.8 125971 3bwlA 126 84.64 1jmcA 246 88.15 b.40.4.3,b.40.4.3 25300,25301 2aegA 268 88.15 d.303.1.1 126622 2v6vA 156 89.06 1txoA 237 89.09 d.219.1.1 112781 2j0wA 449 89.11 c.73.1.3,d.58.18.10,d.58.18.10 137923,137924,137925 3c2qA 345 89.45 1xk5A 204 89.67