# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1c8cA 64 0.4874 b.34.13.1 59084 1xyiA 66 0.6726 2z1cA 75 2.218 1jmoA 480 5.099 e.1.1.1 77138 3bduA 62 10.00 1vclA 432 12.27 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 1bb8 71 14.82 1jsuC 84 15.25 j.55.1.1 46339 2ddzA 190 15.38 1hkxA 147 16.10 d.17.4.7 83567 1yliA 153 20.10 d.38.1.1 123651 1sxvA 172 23.19 1bb8A 71 24.66 d.10.1.1 37478 2ra2A 64 25.40 1h6hA 143 25.58 d.189.1.1 65681 2bvlA 543 26.95 1vpmA 169 27.69 d.38.1.1 113967 1p4uA 153 27.80 b.1.10.2 87780 2ux0A 143 27.96 2uurA 245 28.66 1quqB 121 30.50 b.40.4.3 25305 1wm3A 72 33.08 d.15.1.1 114736 3bjoA 103 34.02 1ut9A 609 34.30 a.102.1.2,b.1.18.2 99912,99913 2vqeE 162 35.55 1ulyA 192 35.71 a.4.5.58 113297 2jesA 503 36.13 1wkbA 810 36.81 2v6vA 156 38.20 2uubE 162 38.42 d.14.1.1,d.50.1.2 139936,139937 1qfhA 212 39.25 b.1.18.10,b.1.18.10 21893,21894 1eysH 259 39.97 b.41.1.1,f.23.10.1 25484,43517 2a13A 166 40.17 b.60.1.8 125971 2pi2E 142 40.18 2pfrA 294 42.23 2gjgA 248 44.39 2e5yA 133 44.47 2ns6A 185 45.39 2i44A 324 45.64 2p12A 176 46.89 2gfaA 119 55.16 b.34.9.1,b.34.9.1 135089,135090 1r5lA 262 56.10 a.5.3.1,c.13.1.1 97099,97100 2os5A 119 56.13 1ofdA 1520 56.58 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 1nr3A 122 57.23 d.236.1.1 86092 1xj4A 119 57.78 d.110.3.2 122027 2brqA 97 58.16 b.1.18.10 129008 1ecfA 504 59.40 c.61.1.1,d.153.1.1 34053,41820 1r85A 379 61.40 c.1.8.3 104839 1jmcA 246 62.37 b.40.4.3,b.40.4.3 25300,25301 1jr2A 286 62.50 c.113.1.1 67111 1xaoA 121 63.13 2awpA 198 63.16 1uesA 191 63.28 a.2.11.1,d.44.1.1 107798,107799 1j58A 385 63.95 b.82.1.2 71531 1dptA 117 65.38 d.80.1.3 39862 1pfo 500 66.41 1booA 323 67.36 c.66.1.11 34248 2arrA 382 67.46 1xb3A 128 67.62 b.6.1.1 115060 2gdgA 114 69.58 d.80.1.3 135015 2ak3A 226 69.81 c.37.1.1,g.41.2.1 31892,45193 1pfoA 500 70.98 f.9.1.1 43826 3bwlA 126 71.04 1xk5A 204 72.56 1nnwA 252 73.61 d.159.1.5 80674 2h7zB 77 75.47 g.7.1.1 136232 3bjkA 153 77.56 2ccwA 129 78.16 b.6.1.1 130259 2nqdB 221 79.07 2gojA 197 79.99 1cuoA 129 80.36 b.6.1.1 23015 2v78A 313 80.84 1gpeA 587 82.28 c.3.1.2,d.16.1.1 30387,37951 1orc 71 82.83 1o7iA 119 83.24 b.40.4.3 86642 1rzhH 260 85.45 b.41.1.1,f.23.10.1 98162,98163 1zkdA 387 85.93 c.66.1.52 125184 2h4aA 325 86.48 1dxrH 258 86.82 b.41.1.1,f.23.10.1 25456,43433 1o6zA 303 87.07 c.2.1.5,d.162.1.1 81107,81108 2q2bA 179 88.98 1uxjA 309 89.68 c.2.1.5,d.162.1.1 108112,108113 1mngA 203 89.89 a.2.11.1,d.44.1.1 15776,38701