# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1c8cA	64	0.8164	b.34.13.1	59084
1xyiA	66	2.413		
1yliA	153	6.236	d.38.1.1	123651
1bb8	71	8.206		
1wm3A	72	9.272	d.15.1.1	114736
2z1cA	75	9.581		
1r5lA	262	10.08	a.5.3.1,c.13.1.1	97099,97100
2uurA	245	11.99		
1ew0A	130	13.14	d.110.3.2	40905
2j0wA	449	13.42	c.73.1.3,d.58.18.10,d.58.18.10	137923,137924,137925
1bb8A	71	13.45	d.10.1.1	37478
1vpmA	169	15.20	d.38.1.1	113967
1jsuC	84	15.79	j.55.1.1	46339
1xj4A	119	16.14	d.110.3.2	122027
2eisA	133	17.21		
3bduA	62	18.24		
1h6hA	143	18.76	d.189.1.1	65681
2q2bA	179	19.83		
3bjoA	103	21.40		
2ux0A	143	22.08		
3bjkA	153	22.68		
1vclA	432	23.71	b.42.2.1,b.42.2.1,d.281.1.1	108498,108499,108500
1j58A	385	23.88	b.82.1.2	71531
1u6lA	149	24.84	d.32.1.7	113067
1sxvA	172	25.28		
1jmoA	480	26.36	e.1.1.1	77138
1r0uA	148	29.01	b.60.1.5	96741
1eu8A	409	32.55	c.94.1.1	59502
2pfrA	294	33.55		
1xaoA	121	34.79		
2if5A	120	35.51		
2h4aA	325	35.62		
1orc	71	36.70		
2v6vA	156	36.78		
1epwA	1290	38.34	b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1	24269,25614,40305,45785
1p4uA	153	42.83	b.1.10.2	87780
2ak3A	226	43.56	c.37.1.1,g.41.2.1	31892,45193
2a13A	166	43.73	b.60.1.8	125971
2bqxA	173	45.51		
2jesA	503	46.37		
1gx3A	284	48.36	d.3.1.5	70678
3bwlA	126	49.49		
2pr5A	132	51.52		
1hkxA	147	51.68	d.17.4.7	83567
2gjgA	248	54.10		
1earA	147	54.98	b.107.1.1,d.58.38.1	64875,64876
2vqeE	162	55.09		
1p4oA	322	56.42	d.144.1.7	87775
1quqB	121	56.60	b.40.4.3	25305
1twlA	186	58.18	b.40.5.1	112764
2ra2A	64	60.78		
2uubE	162	61.89	d.14.1.1,d.50.1.2	139936,139937
1bdsA	43	63.62	g.9.1.1	44596
2au7A	175	64.42		
2v78A	313	66.65		
3c5cA	187	66.79		
2gfaA	119	67.83	b.34.9.1,b.34.9.1	135089,135090
2aukA	190	68.96		
1w5rA	278	70.99	d.3.1.5	120643
1wkbA	810	71.37		
2pi2E	142	72.52		
1vjyA	303	72.54	d.144.1.7	108633
1kolA	398	74.22	b.35.1.2,c.2.1.1	77474,77475
2glwA	92	77.27		
2p12A	176	77.44		
3cnxA	170	79.10		
1r7sA	106	79.89	d.15.4.1	97207
2i44A	324	79.90		
1uesA	191	80.69	a.2.11.1,d.44.1.1	107798,107799
1a41	234	81.47		
1a41A	234	81.80	d.163.1.2	42174
2sak	121	81.97		
2sakA	121	81.98	d.15.5.1	37711
2aq6A	147	83.48	b.45.1.1	127156
1ucsA	64	89.73	b.85.1.1	88466