# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1c8cA	64	0.5889	b.34.13.1	59084
1xyiA	66	1.766		
2z1cA	75	5.422		
1yliA	153	6.270	d.38.1.1	123651
1bb8	71	6.423		
1jmoA	480	8.395	e.1.1.1	77138
1bb8A	71	10.61	d.10.1.1	37478
1r5lA	262	11.61	a.5.3.1,c.13.1.1	97099,97100
1eu8A	409	13.40	c.94.1.1	59502
1vclA	432	13.74	b.42.2.1,b.42.2.1,d.281.1.1	108498,108499,108500
1jsuC	84	15.08	j.55.1.1	46339
1p4uA	153	15.16	b.1.10.2	87780
1vpmA	169	18.33	d.38.1.1	113967
2ak3A	226	18.39	c.37.1.1,g.41.2.1	31892,45193
1sxvA	172	19.39		
2q2bA	179	19.73		
2uurA	245	20.44		
3bjoA	103	21.16		
2pfrA	294	22.67		
3bjkA	153	22.72		
1wm3A	72	24.37	d.15.1.1	114736
2eisA	133	28.23		
2h4aA	325	28.44		
1wkbA	810	30.09		
1hkxA	147	31.63	d.17.4.7	83567
1xj4A	119	32.65	d.110.3.2	122027
1ew0A	130	34.58	d.110.3.2	40905
1j58A	385	35.29	b.82.1.2	71531
2if5A	120	35.63		
1twlA	186	36.68	b.40.5.1	112764
1u6lA	149	37.41	d.32.1.7	113067
2ns6A	185	39.21		
1h6hA	143	43.42	d.189.1.1	65681
2vqeE	162	47.64		
2j0wA	449	47.90	c.73.1.3,d.58.18.10,d.58.18.10	137923,137924,137925
2v6vA	156	49.04		
2bqxA	173	49.68		
2v78A	313	51.35		
3bduA	62	54.95		
2ux0A	143	55.09		
2i44A	324	56.84		
2glwA	92	58.69		
1ltlA	279	58.95	b.40.4.11	84701
2gfaA	119	58.96	b.34.9.1,b.34.9.1	135089,135090
1ulyA	192	59.19	a.4.5.58	113297
3c5cA	187	60.35		
1xaoA	121	60.78		
3cygA	222	60.90		
2uubE	162	63.69	d.14.1.1,d.50.1.2	139936,139937
2bvlA	543	69.84		
2aegA	268	70.35	d.303.1.1	126622
2aukA	190	70.51		
2fwtA	125	74.54		
1xk5A	204	75.10		
2au7A	175	75.76		
2p12A	176	78.39		
1jr2A	286	80.84	c.113.1.1	67111
1ucsA	64	81.93	b.85.1.1	88466
1khcA	147	82.11	b.34.9.2	68608
3ckmA	327	82.77		
2jesA	503	82.79		
1orc	71	83.91		
3bwlA	126	86.19		
2icyA	469	87.55	b.81.1.4,c.68.1.5	137257,137258