# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1c8cA	64	0.7188	b.34.13.1	59084
1xyiA	66	1.968		
2z1cA	75	4.564		
1bb8	71	5.746		
1r5lA	262	7.019	a.5.3.1,c.13.1.1	97099,97100
1yliA	153	7.189	d.38.1.1	123651
1bb8A	71	9.742	d.10.1.1	37478
1jmoA	480	12.37	e.1.1.1	77138
1vpmA	169	14.55	d.38.1.1	113967
1sxvA	172	16.20		
1eu8A	409	16.33	c.94.1.1	59502
1jsuC	84	17.06	j.55.1.1	46339
1vclA	432	17.89	b.42.2.1,b.42.2.1,d.281.1.1	108498,108499,108500
1p4uA	153	18.41	b.1.10.2	87780
2q2bA	179	18.91		
2ak3A	226	23.24	c.37.1.1,g.41.2.1	31892,45193
1ew0A	130	23.45	d.110.3.2	40905
3bjkA	153	24.80		
2eisA	133	25.09		
2pfrA	294	25.17		
3bjoA	103	25.50		
1wkbA	810	26.82		
1xj4A	119	28.18	d.110.3.2	122027
2h4aA	325	28.29		
2if5A	120	35.31		
1wm3A	72	35.97	d.15.1.1	114736
2bqxA	173	36.24		
2uurA	245	38.55		
1twlA	186	39.79	b.40.5.1	112764
1hkxA	147	39.91	d.17.4.7	83567
3bduA	62	42.86		
2v78A	313	43.60		
1h6hA	143	44.20	d.189.1.1	65681
1j58A	385	45.60	b.82.1.2	71531
1ulyA	192	49.64	a.4.5.58	113297
1u6lA	149	50.56	d.32.1.7	113067
2v6vA	156	52.23		
2j0wA	449	53.29	c.73.1.3,d.58.18.10,d.58.18.10	137923,137924,137925
2ux0A	143	56.21		
2au7A	175	57.25		
2vqeE	162	59.10		
2ns6A	185	60.06		
3c5cA	187	60.22		
2aegA	268	61.21	d.303.1.1	126622
2p12A	176	69.56		
2jesA	503	70.13		
1xaoA	121	71.86		
2uubE	162	72.58	d.14.1.1,d.50.1.2	139936,139937
2pr5A	132	75.22		
3bwlA	126	76.16		
2sakA	121	79.17	d.15.5.1	37711
2sak	121	79.38		
3ckmA	327	79.97		
1k12A	158	82.78	b.18.1.15	71978
1xk5A	204	83.45		
2fwtA	125	84.95		
2bvlA	543	85.29		
2glwA	92	86.49		
1vr3A	191	87.47	b.82.1.6	120431
1orc	71	87.68		
2i44A	324	88.42		
1jr2A	286	88.62	c.113.1.1	67111
1m3qA	317	89.13	a.96.1.3,d.129.1.2	91184,91185
1earA	147	89.57	b.107.1.1,d.58.38.1	64875,64876
2jfrA	234	89.97