# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1xyiA	66	0.3629		
1c8cA	64	0.4649	b.34.13.1	59084
2ak3A	226	2.049	c.37.1.1,g.41.2.1	31892,45193
1yliA	153	6.394	d.38.1.1	123651
3bjkA	153	6.563		
2z1cA	75	8.179		
2axpA	173	12.91	c.37.1.1	127497
1r5lA	262	13.06	a.5.3.1,c.13.1.1	97099,97100
1vpmA	169	15.54	d.38.1.1	113967
2gysA	419	17.33	b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1	135865,135866,135867,135868
2eisA	133	20.70		
1eu8A	409	22.17	c.94.1.1	59502
3tmkA	216	24.89	c.37.1.1	31920
2q2bA	179	26.56		
2gvhA	288	26.58	d.38.1.1,d.38.1.1	135776,135777
2qrwA	128	30.73		
1kagA	173	31.32	c.37.1.2	72249
1ln4A	104	37.51	d.68.4.1	74043
2bvlA	543	38.33		
1jsuC	84	38.57	j.55.1.1	46339
2gk4A	232	39.54		
1twfK	120	41.22	d.74.3.2	112736
2pv4A	145	41.74		
1sg7A	96	48.42	a.239.1.1	118961
2oyoA	196	50.48		
1zd8A	227	53.00		
1dcjA	81	59.07	d.68.3.3	59115
1gd0A	122	59.79	d.80.1.3	39834
2geeA	203	61.05		
2aukA	190	61.39		
1jo0A	98	61.73	d.68.4.1	77140
2nw0A	189	66.22		
1vkwA	218	69.59	d.90.1.2	108695
2csgA	424	70.42	b.82.2.12	130768
2sak	121	74.09		
2sakA	121	74.17	d.15.5.1	37711
2if5A	120	74.58		
2glwA	92	77.19		
2b79A	144	77.82		
2os5A	119	77.86		
2guzA	71	80.96		
3ba3A	145	82.76		
1v54L	47	83.05	f.23.6.1	100333
3bjoA	103	83.74		
1wm3A	72	84.56	d.15.1.1	114736
1zinA	217	85.25	c.37.1.1,g.41.2.1	31915,45178
1fs1B	141	88.36	a.157.1.1,d.42.1.1	19252,38664
2gdgA	114	89.52	d.80.1.3	135015
2duyA	75	89.61		
1viaA	175	89.65	c.37.1.2	100754
2pqcA	445	89.82