# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1c8cA	64	0.5260	b.34.13.1	59084
1xyiA	66	0.9150		
1yliA	153	4.490	d.38.1.1	123651
1r5lA	262	5.298	a.5.3.1,c.13.1.1	97099,97100
2j0wA	449	5.714	c.73.1.3,d.58.18.10,d.58.18.10	137923,137924,137925
1bb8	71	6.006		
1vpmA	169	6.516	d.38.1.1	113967
3bduA	62	7.370		
2eisA	133	7.963		
2z1cA	75	8.317		
1jmoA	480	9.320	e.1.1.1	77138
1bb8A	71	9.454	d.10.1.1	37478
2uurA	245	9.757		
2ux0A	143	12.11		
1j58A	385	12.48	b.82.1.2	71531
2sakA	121	13.36	d.15.5.1	37711
2sak	121	13.37		
1jsuC	84	13.79	j.55.1.1	46339
2vqeE	162	17.63		
3bjkA	153	18.02		
2q2bA	179	18.44		
2ra2A	64	19.04		
2imjA	166	21.11		
2uubE	162	23.47	d.14.1.1,d.50.1.2	139936,139937
2a13A	166	26.46	b.60.1.8	125971
2if5A	120	26.58		
1vclA	432	27.05	b.42.2.1,b.42.2.1,d.281.1.1	108498,108499,108500
1wm3A	72	27.30	d.15.1.1	114736
1sxvA	172	28.66		
1xk5A	204	29.97		
1quqB	121	30.88	b.40.4.3	25305
2pi2E	142	32.84		
3bjoA	103	33.14		
1xj4A	119	33.77	d.110.3.2	122027
1h6hA	143	35.50	d.189.1.1	65681
1ulyA	192	38.99	a.4.5.58	113297
1p4uA	153	40.90	b.1.10.2	87780
3c96A	415	42.06		
1ew0A	130	42.95	d.110.3.2	40905
2jfrA	234	44.84		
1kolA	398	45.08	b.35.1.2,c.2.1.1	77474,77475
2arrA	382	46.02		
1kyfA	247	46.17	b.1.10.1,d.105.1.1	73220,73221
1uesA	191	47.30	a.2.11.1,d.44.1.1	107798,107799
2bvlA	543	47.55		
1rljA	139	50.51	c.23.5.7	104983
2gjgA	248	51.49		
1jrrA	382	57.17	e.1.1.1	63256
1ltlA	279	57.23	b.40.4.11	84701
2ak3A	226	57.54	c.37.1.1,g.41.2.1	31892,45193
1f1xA	322	58.01	d.32.1.3,d.32.1.3	83208,83209
2jdaA	145	58.43		
1f1uA	323	59.52	d.32.1.3,d.32.1.3	83200,83201
1sg4A	260	59.86	c.14.1.3	118957
2v6vA	156	60.18		
1r0uA	148	60.81	b.60.1.5	96741
2dhoA	235	62.44		
2pv4A	145	63.73		
2os5A	119	64.48		
1r0pA	312	65.16	d.144.1.7	96734
2awpA	198	65.38		
2fwvA	226	66.17		
1gpeA	587	67.71	c.3.1.2,d.16.1.1	30387,37951
1xaoA	121	68.69		
1uerA	191	71.49	a.2.11.1,d.44.1.1	107790,107791
2bqxA	173	72.54		
2gdgA	114	74.30	d.80.1.3	135015
2pfrA	294	74.65		
1ucsA	64	75.01	b.85.1.1	88466
1p4oA	322	75.60	d.144.1.7	87775
1epwA	1290	75.78	b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1	24269,25614,40305,45785
1vjyA	303	77.53	d.144.1.7	108633
1dptA	117	77.64	d.80.1.3	39862
1bdsA	43	78.45	g.9.1.1	44596
1r7sA	106	78.78	d.15.4.1	97207
1u6lA	149	79.01	d.32.1.7	113067
2auwA	170	80.84	a.35.1.10,d.331.1.1	127339,127340
3bwlA	126	81.15		
2icyA	469	81.18	b.81.1.4,c.68.1.5	137257,137258
3c9qA	205	82.26		
2geeA	203	82.42		
2ns6A	185	83.44		
3cnxA	170	86.80		
1w9aA	147	87.45	b.45.1.1	114408
2i44A	324	89.33		
2aq6A	147	89.69	b.45.1.1	127156
1orc	71	89.98