# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1xyiA 66 0.7396 1c8cA 64 1.979 b.34.13.1 59084 1yliA 153 2.044 d.38.1.1 123651 1wkbA 810 2.318 2icyA 469 3.170 b.81.1.4,c.68.1.5 137257,137258 3tmkA 216 3.806 c.37.1.1 31920 2v3zA 440 3.854 2a6vA 226 4.072 b.29.1.13 126312 1kyfA 247 7.255 b.1.10.1,d.105.1.1 73220,73221 1jv1A 505 7.386 c.68.1.5 71892 1r5lA 262 8.913 a.5.3.1,c.13.1.1 97099,97100 1xezA 721 9.264 1sxvA 172 9.478 1ecfA 504 9.587 c.61.1.1,d.153.1.1 34053,41820 1vpmA 169 9.948 d.38.1.1 113967 1vclA 432 10.73 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 1arb 268 11.41 1n4wA 504 12.41 c.3.1.2,d.16.1.1 91676,91677 1feuA 206 14.54 b.53.1.1 59801 3b5lB 198 14.80 2qe8A 343 15.61 2o8bA 934 16.35 1at0A 145 16.44 b.86.1.1 28374 2au7A 175 16.83 2z1cA 75 19.43 1uypA 432 19.76 b.29.1.19,b.67.2.3 100176,100177 1lj8A 493 20.59 a.100.1.9,c.2.1.6 90392,90393 2dhoA 235 20.84 1bb8 71 21.41 2a38A 194 21.79 2q2bA 179 23.51 2vqeE 162 23.69 1hr6B 443 24.49 d.185.1.1,d.185.1.1 61166,61167 2bqxA 173 24.50 1c30B 382 24.65 c.8.3.1,c.23.16.1 30736,31413 2ns6A 185 24.83 2q2gA 180 25.05 1m3qA 317 25.27 a.96.1.3,d.129.1.2 91184,91185 2h4aA 325 25.49 2eisA 133 25.81 8fabB 224 26.78 b.1.1.1,b.1.1.2 19773,20883 1bb8A 71 26.81 d.10.1.1 37478 1m3iA 471 27.98 f.9.1.1 91178 2imqX 282 28.14 1mrgA 263 28.46 d.165.1.1 42183 2gnpA 266 29.36 1pbyB 337 30.97 b.69.2.2 94422 3bduA 62 31.04 1jsuC 84 31.59 j.55.1.1 46339 2oq0A 206 31.84 1vjfA 180 32.68 d.116.1.1 100809 2imjA 166 33.24 1juhA 350 35.04 b.82.1.5 71884 2dkhA 639 36.42 1bw0A 416 37.26 c.67.1.1 34385 1ct9A 553 37.30 c.26.2.1,d.153.1.1 31616,41834 3c96A 415 38.26 2ra2A 64 38.91 2q0dA 353 40.31 2hhpA 530 40.85 a.160.1.1,d.218.1.3,d.58.16.1 136503,136504,136505 2f2uA 402 41.43 1i40A 175 43.92 b.40.5.1 66024 1k94A 165 44.37 a.39.1.8 68333 2uvpA 186 44.97 1h2kA 349 45.44 b.82.2.6 76572 1dcjA 81 45.45 d.68.3.3 59115 1a9xB 379 46.13 c.8.3.1,c.23.16.1 30732,31409 2asbA 251 46.35 b.40.4.5,d.52.3.1,d.52.3.1 127244,127245,127246 2e9xC 219 48.34 1qysA 106 48.47 k.41.1.1 96603 1eylA 186 48.98 b.42.4.1 25593 2reeA 224 49.34 1hnjA 317 49.56 c.95.1.2,c.95.1.2 35969,35970 2fp8A 322 52.14 2zivA 311 52.69 2gnqA 336 52.88 2ak3A 226 53.02 c.37.1.1,g.41.2.1 31892,45193 2uurA 245 53.70 1wkyA 464 54.37 b.18.1.31,c.1.8.3 120992,120993 2hq6A 185 56.52 1zvkA 358 56.73 1npeA 267 57.01 b.68.5.1 92032 1td4A 115 57.05 b.85.2.1 112389 3c0nA 470 57.10 1f8eA 388 57.64 b.68.1.1 59694 1jofA 365 58.84 b.69.10.1 71775 2as0A 396 59.51 b.122.1.9,c.66.1.51 127227,127228 2fxqA 264 59.81 1uteA 313 60.24 d.159.1.1 42078 1rwiA 270 60.33 b.68.9.1 97987 2b4vA 468 61.02 a.160.1.4,d.218.1.10 127864,127865 2gfaA 119 61.24 b.34.9.1,b.34.9.1 135089,135090 2qrwA 128 61.37 2pi2E 142 61.83 1sjiA 350 63.66 2ux0A 143 64.28 3b2mA 295 64.40 1efvA 315 67.40 c.26.2.3,c.31.1.2 31633,31728 3bjoA 103 67.42 1eu8A 409 67.45 c.94.1.1 59502 1uhnA 189 68.49 a.39.1.5 99399 1g8lA 411 69.39 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 2p39A 155 69.94 1wm3A 72 70.68 d.15.1.1 114736 2d5mA 190 73.58 2eeyA 162 73.76 2epgA 487 74.36 1zxmA 400 76.05 2geeA 203 77.55 1z0wA 207 78.41 2heuA 401 84.49 2uyzB 79 84.84 d.15.1.1 140039 1r89A 437 84.86 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1p22A 435 87.45 a.158.1.1,b.69.4.1 87715,87716 2h8fB 146 88.49 a.1.1.2 136240 2hw2A 143 89.00 2qa1A 500 89.06 1a3qA 285 89.61 b.1.18.1,b.2.5.3 21932,22447 2j0iA 303 89.64