# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1xyiA	66	0.4064		
1c8cA	64	0.4220	b.34.13.1	59084
2z1cA	75	3.529		
1yliA	153	3.613	d.38.1.1	123651
1vpmA	169	5.876	d.38.1.1	113967
1r5lA	262	6.366	a.5.3.1,c.13.1.1	97099,97100
1jmoA	480	7.285	e.1.1.1	77138
1bb8	71	8.260		
1vclA	432	12.14	b.42.2.1,b.42.2.1,d.281.1.1	108498,108499,108500
1p4uA	153	12.56	b.1.10.2	87780
1bb8A	71	13.18	d.10.1.1	37478
1jsuC	84	13.23	j.55.1.1	46339
2uubE	162	14.16	d.14.1.1,d.50.1.2	139936,139937
2vqeE	162	15.00		
2eisA	133	15.98		
2bvlA	543	16.00		
3bjkA	153	18.85		
3bjoA	103	20.68		
3bduA	62	23.34		
2if5A	120	23.51		
2q2bA	179	25.05		
1ulyA	192	25.71	a.4.5.58	113297
2i44A	324	25.99		
1wm3A	72	26.29	d.15.1.1	114736
2pfrA	294	27.82		
1wkbA	810	30.08		
2h4aA	325	33.19		
2j0wA	449	34.49	c.73.1.3,d.58.18.10,d.58.18.10	137923,137924,137925
1ltlA	279	36.03	b.40.4.11	84701
1sxvA	172	36.86		
2ux0A	143	39.85		
2bqxA	173	40.57		
1j58A	385	41.56	b.82.1.2	71531
2pv4A	145	45.14		
2ak3A	226	46.29	c.37.1.1,g.41.2.1	31892,45193
1ofdA	1520	46.56	b.80.4.1,c.1.4.1,d.153.1.1	86935,86936,86937
1jr2A	286	47.34	c.113.1.1	67111
2ns6A	185	47.62		
2gfaA	119	51.79	b.34.9.1,b.34.9.1	135089,135090
1r0uA	148	52.31	b.60.1.5	96741
2os5A	119	52.35		
2gdgA	114	53.79	d.80.1.3	135015
2jfrA	234	53.83		
1quqB	121	54.30	b.40.4.3	25305
1xj4A	119	55.93	d.110.3.2	122027
2icyA	469	59.76	b.81.1.4,c.68.1.5	137257,137258
1u6lA	149	61.93	d.32.1.7	113067
1dptA	117	62.59	d.80.1.3	39862
2uurA	245	63.07		
2jdaA	145	63.91		
1pg6A	243	63.95	b.82.5.2	94673
1bdsA	43	64.03	g.9.1.1	44596
1ucsA	64	64.46	b.85.1.1	88466
2pi2E	142	64.84		
1eysH	259	67.41	b.41.1.1,f.23.10.1	25484,43517
2sak	121	68.40		
2aegA	268	68.67	d.303.1.1	126622
2a38A	194	69.70		
1h6hA	143	70.84	d.189.1.1	65681
3ckmA	327	72.61		
2sakA	121	73.26	d.15.5.1	37711
1gd0A	122	73.55	d.80.1.3	39834
2ddzA	190	73.82		
2geeA	203	74.57		
1cmcA	104	75.00	a.43.1.5	17462
2ra2A	64	75.16		
1ew0A	130	75.59	d.110.3.2	40905
2vl6A	268	77.64		
1kyfA	247	78.91	b.1.10.1,d.105.1.1	73220,73221
1rljA	139	78.96	c.23.5.7	104983
2in0A	139	79.49		
2qkmB	266	80.06		
1eu8A	409	80.26	c.94.1.1	59502
1wspA	84	80.51		
2jdiH	146	80.84	a.2.10.1,b.93.1.1	138273,138274
2jesA	503	83.24		
2p12A	176	83.69		
2inbA	140	84.84		
2arrA	382	86.31		
1dxrH	258	86.59	b.41.1.1,f.23.10.1	25456,43433
1xk5A	204	86.72		
1jrrA	382	87.20	e.1.1.1	63256
2q66A	525	87.98		
2a13A	166	88.33	b.60.1.8	125971
1hkxA	147	88.45	d.17.4.7	83567