# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1c8cA	64	1.058	b.34.13.1	59084
1xyiA	66	1.885		
1r5lA	262	5.773	a.5.3.1,c.13.1.1	97099,97100
2z1cA	75	6.676		
1bb8	71	8.966		
1vclA	432	10.92	b.42.2.1,b.42.2.1,d.281.1.1	108498,108499,108500
1yliA	153	12.16	d.38.1.1	123651
1bb8A	71	14.51	d.10.1.1	37478
1jsuC	84	14.89	j.55.1.1	46339
1ulyA	192	15.41	a.4.5.58	113297
1p4uA	153	16.77	b.1.10.2	87780
1jmoA	480	17.75	e.1.1.1	77138
2ak3A	226	19.50	c.37.1.1,g.41.2.1	31892,45193
2ddzA	190	22.75		
1vpmA	169	22.82	d.38.1.1	113967
2j0wA	449	32.44	c.73.1.3,d.58.18.10,d.58.18.10	137923,137924,137925
1eu8A	409	34.06	c.94.1.1	59502
2i44A	324	41.11		
2q2bA	179	41.81		
1u6lA	149	43.88	d.32.1.7	113067
1wm3A	72	43.89	d.15.1.1	114736
2bvlA	543	44.41		
2eisA	133	48.36		
2ns6A	185	48.94		
1sxvA	172	49.00		
1wkbA	810	49.95		
2v78A	313	53.30		
2uubE	162	53.80	d.14.1.1,d.50.1.2	139936,139937
3bjkA	153	54.96		
3bjoA	103	55.83		
1feuA	206	59.95	b.53.1.1	59801
1hkxA	147	60.97	d.17.4.7	83567
1v54B	227	62.59	b.6.1.2,f.17.2.1	100322,100323
2vqeE	162	62.75		
2if5A	120	62.78		
2h4aA	325	64.35		
1rljA	139	68.29	c.23.5.7	104983
3tmkA	216	69.43	c.37.1.1	31920
1edtA	271	71.43	c.1.8.5	28993
3c1mA	473	71.79		
2pfrA	294	73.00		
2ux0A	143	74.55		
2b7uA	257	75.70		
2sak	121	80.40		
2sakA	121	80.40	d.15.5.1	37711
1r85A	379	82.43	c.1.8.3	104839
2d7nA	93	88.28	b.1.18.10	131322
2jdiH	146	89.20	a.2.10.1,b.93.1.1	138273,138274