# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1c8cA	64	1.401	b.34.13.1	59084
1xyiA	66	1.503		
1r5lA	262	3.071	a.5.3.1,c.13.1.1	97099,97100
2z1cA	75	5.383		
2ns6A	185	12.26		
1yliA	153	12.36	d.38.1.1	123651
2eisA	133	14.44		
1jsuC	84	16.10	j.55.1.1	46339
1bb8	71	17.40		
2j0wA	449	18.28	c.73.1.3,d.58.18.10,d.58.18.10	137923,137924,137925
1sxvA	172	21.26		
1vpmA	169	21.93	d.38.1.1	113967
1wm3A	72	24.04	d.15.1.1	114736
1ulyA	192	24.14	a.4.5.58	113297
2q2bA	179	32.34		
2ux0A	143	32.73		
1bb8A	71	32.77	d.10.1.1	37478
2pfrA	294	34.26		
2if5A	120	34.52		
2bvlA	543	35.23		
1p4uA	153	36.07	b.1.10.2	87780
2bqxA	173	37.55		
3bjoA	103	38.95		
1xk5A	204	41.02		
2uurA	245	41.52		
3bduA	62	41.85		
2ak3A	226	45.68	c.37.1.1,g.41.2.1	31892,45193
3bjkA	153	45.77		
3c1mA	473	45.91		
2uubE	162	46.09	d.14.1.1,d.50.1.2	139936,139937
1h6hA	143	49.58	d.189.1.1	65681
1jmoA	480	49.83	e.1.1.1	77138
2au7A	175	51.05		
2vqeE	162	55.29		
2sak	121	56.50		
2sakA	121	56.50	d.15.5.1	37711
1ew0A	130	56.60	d.110.3.2	40905
1xj4A	119	58.04	d.110.3.2	122027
2v6vA	156	62.68		
2fwtA	125	66.37		
1r0uA	148	68.60	b.60.1.5	96741
2v78A	313	70.29		
1eu8A	409	71.11	c.94.1.1	59502
1hkxA	147	72.71	d.17.4.7	83567
1rljA	139	72.98	c.23.5.7	104983
2inbA	140	74.42		
2ra2A	64	75.57		
1twlA	186	76.61	b.40.5.1	112764
2pr5A	132	76.76		
1r85A	379	76.84	c.1.8.3	104839
2os5A	119	80.19		
1orc	71	81.32		
2gfaA	119	85.82	b.34.9.1,b.34.9.1	135089,135090
1j58A	385	85.99	b.82.1.2	71531
1sg4A	260	88.29	c.14.1.3	118957
1v54B	227	88.83	b.6.1.2,f.17.2.1	100322,100323
2dulA	378	89.35		
2ddzA	190	89.75