# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1xyiA	66	1.294		
1c8cA	64	1.479	b.34.13.1	59084
1r5lA	262	3.357	a.5.3.1,c.13.1.1	97099,97100
2z1cA	75	4.701		
1yliA	153	5.363	d.38.1.1	123651
1bb8	71	12.84		
1vpmA	169	14.28	d.38.1.1	113967
1jsuC	84	15.73	j.55.1.1	46339
2q2bA	179	17.50		
1wm3A	72	17.83	d.15.1.1	114736
1eu8A	409	18.42	c.94.1.1	59502
2eisA	133	18.96		
3bjkA	153	20.11		
1bb8A	71	21.28	d.10.1.1	37478
1vclA	432	22.90	b.42.2.1,b.42.2.1,d.281.1.1	108498,108499,108500
2v78A	313	24.86		
3bjoA	103	26.51		
1jmoA	480	27.14	e.1.1.1	77138
2j0wA	449	30.51	c.73.1.3,d.58.18.10,d.58.18.10	137923,137924,137925
2bvlA	543	30.67		
2uurA	245	31.28		
2if5A	120	34.35		
2ak3A	226	36.98	c.37.1.1,g.41.2.1	31892,45193
2ns6A	185	37.35		
1ulyA	192	39.06	a.4.5.58	113297
1h6hA	143	40.44	d.189.1.1	65681
2v6vA	156	42.72		
2ux0A	143	42.87		
1sxvA	172	42.93		
2uubE	162	43.48	d.14.1.1,d.50.1.2	139936,139937
1u6lA	149	44.56	d.32.1.7	113067
2sak	121	44.86		
2sakA	121	44.86	d.15.5.1	37711
1wkbA	810	45.29		
1p4uA	153	46.34	b.1.10.2	87780
3bduA	62	49.08		
1j58A	385	50.19	b.82.1.2	71531
1xk5A	204	50.39		
2brqA	97	53.98	b.1.18.10	129008
2cb5A	453	58.69	d.3.1.1	37035
2bqxA	173	63.03		
3c1mA	473	63.28		
2vqeE	162	63.54		
1xj4A	119	66.89	d.110.3.2	122027
2i44A	324	67.56		
3c5cA	187	68.32		
1r0uA	148	69.64	b.60.1.5	96741
2os5A	119	70.07		
2d7nA	93	70.41	b.1.18.10	131322
2jfrA	234	73.24		
2qjtA	352	74.40		
2gdgA	114	76.11	d.80.1.3	135015
1r85A	379	76.12	c.1.8.3	104839
1yz7A	188	76.31		
1ew0A	130	76.42	d.110.3.2	40905
2pfrA	294	78.87		
2gfaA	119	79.85	b.34.9.1,b.34.9.1	135089,135090
2axpA	173	81.18	c.37.1.1	127497
1ucsA	64	81.24	b.85.1.1	88466
1xaoA	121	81.30		
1txoA	237	81.48	d.219.1.1	112781
1sg4A	260	81.67	c.14.1.3	118957
1twlA	186	82.29	b.40.5.1	112764
1ltlA	279	84.03	b.40.4.11	84701
2vl6A	268	84.99		
1irdB	146	85.92	a.1.1.2	66287
1k12A	158	87.99	b.18.1.15	71978
1t6aA	126	89.05	d.129.8.1	106555
1orc	71	89.40