# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ak3A	226	0.1543	c.37.1.1,g.41.2.1	31892,45193
1xyiA	66	0.8105		
1c8cA	64	0.8278	b.34.13.1	59084
1booA	323	3.322	c.66.1.11	34248
2z1cA	75	5.977		
1bb8A	71	10.01	d.10.1.1	37478
3bjkA	153	11.37		
1wm3A	72	11.76	d.15.1.1	114736
1bb8	71	12.36		
2bvlA	543	12.98		
2q2bA	179	15.89		
1zd8A	227	17.32		
1h2cA	140	18.21	b.31.1.1	83462
1yliA	153	18.55	d.38.1.1	123651
2qv8A	159	21.70		
2gvhA	288	23.85	d.38.1.1,d.38.1.1	135776,135777
1jsuC	84	25.28	j.55.1.1	46339
1vpmA	169	28.16	d.38.1.1	113967
1a41A	234	33.84	d.163.1.2	42174
1jo0A	98	33.86	d.68.4.1	77140
1m3qA	317	36.23	a.96.1.3,d.129.1.2	91184,91185
1a41	234	36.42		
1dj7A	117	36.51	g.36.1.1	44997
3ba3A	145	37.05		
1pi1A	185	38.49	a.29.7.1	94699
2eisA	133	38.74		
1twfK	120	41.09	d.74.3.2	112736
2qrwA	128	42.42		
1k2eA	156	44.97	d.113.1.1	72010
2f1lA	187	46.44	b.41.1.4,b.43.3.4	132780,132781
1vcsA	102	51.24	a.47.2.1	119985
1ltlA	279	52.58	b.40.4.11	84701
2aefA	234	55.99		
2nw0A	189	56.27		
1kagA	173	59.28	c.37.1.2	72249
1iapA	211	60.37	a.91.1.1	62119
1jmmA	377	60.52	b.30.6.1	71749
1t6aA	126	62.24	d.129.8.1	106555
1i4mA	108	65.27	d.6.1.1	66025
3buuA	229	67.49		
2coiA	386	67.98		
2aukA	190	68.06		
2p12A	176	72.45		
2dxnA	274	72.77		
1rdsA	105	73.23	d.1.1.4	36236
1eu8A	409	74.21	c.94.1.1	59502
1uw4B	248	74.23	a.118.1.14	100072
1y96B	85	74.60		
2csvA	72	74.97		
1k3rA	268	75.63	b.40.4.10,c.116.1.2	72018,72019
1gd0A	122	77.63	d.80.1.3	39834
1a3c	181	78.08		
2gfaA	119	79.19	b.34.9.1,b.34.9.1	135089,135090
1molA	94	81.80	d.17.1.1	37988
2f51A	118	82.19		
2duyA	75	82.29		
1uheA	97	84.06		
2egvA	229	87.71		
2gdgA	114	88.01	d.80.1.3	135015
1a79A	171	88.55	c.52.2.1,d.75.1.1	33340,39739