# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1xyiA	66	3.406		
1c8cA	64	3.529	b.34.13.1	59084
1yliA	153	12.47	d.38.1.1	123651
1jo0A	98	17.18	d.68.4.1	77140
2ak3A	226	17.68	c.37.1.1,g.41.2.1	31892,45193
2eisA	133	18.19		
3bjkA	153	18.53		
1bb8	71	20.35		
1vpmA	169	21.63	d.38.1.1	113967
2z1cA	75	22.64		
2q2bA	179	27.35		
1bb8A	71	28.89	d.10.1.1	37478
1jsuC	84	31.50	j.55.1.1	46339
1m3qA	317	37.34	a.96.1.3,d.129.1.2	91184,91185
1booA	323	40.64	c.66.1.11	34248
2p12A	176	43.05		
1t6aA	126	51.11	d.129.8.1	106555
2bvlA	543	55.11		
3ba3A	145	61.47		
2gvhA	288	62.08	d.38.1.1,d.38.1.1	135776,135777
1v8hA	107	63.75	b.1.18.19	119870
1r5lA	262	69.26	a.5.3.1,c.13.1.1	97099,97100
3bduA	62	80.09		
2ra2A	64	80.35		
2pbrA	195	81.99		
2fwtA	125	87.69