# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2e5yA 133 0.1240 1fs0E 138 1.862 a.2.10.1,b.93.1.1 59997,59998 3ba3A 145 2.211 1xyiA 66 2.467 2i5hA 205 3.985 1d7qA 143 4.446 b.40.4.5 25331 2e2dC 180 4.654 b.40.3.1 131980 2oqkA 117 5.496 1c8cA 64 5.736 b.34.13.1 59084 2pbcA 102 8.699 2halA 212 8.971 b.47.1.4 136289 1hskA 326 11.59 d.145.1.2,d.146.1.1 61241,61242 1ou8A 111 11.88 b.136.1.1 93543 2furA 209 12.39 b.45.1.1 134185 1br9 194 13.06 2gfaA 119 14.14 b.34.9.1,b.34.9.1 135089,135090 2qqrA 118 14.97 1wocA 103 15.69 2gzvA 114 18.47 2bqxA 173 18.67 1ykjA 394 19.41 3pviA 157 21.27 c.52.1.6 33300 1vcdA 126 22.18 d.113.1.1 119970 3bp1A 290 22.92 2z1cA 75 23.19 2bw2A 140 23.79 2ra2A 64 25.96 1x6oA 174 26.16 b.34.5.2,b.40.4.5 109493,109494 1hztA 190 26.29 d.113.1.2 61459 1kwaA 88 30.67 b.36.1.1 24772 1iz6A 138 30.97 b.34.5.2,b.40.4.5 76976,76977 3cc6A 281 31.17 1jmcA 246 32.22 b.40.4.3,b.40.4.3 25300,25301 1pbeA 394 35.59 c.3.1.2,d.16.1.2 30338,37869 2rczA 81 35.96 3bduA 62 37.10 1xk5A 204 37.23 1rg9A 383 41.48 d.130.1.1,d.130.1.1,d.130.1.1 97427,97428,97429 2r2yA 153 41.77 1twlA 186 42.30 b.40.5.1 112764 1c3mA 147 42.41 b.77.3.1 27983 1mai 131 42.50 2uyzB 79 43.95 d.15.1.1 140039 1xccA 220 44.37 c.47.1.10 115113 2ebeA 106 46.43 2cxvA 219 46.68 b.47.1.4 131012 2a19A 175 47.14 2czrA 226 47.50 1zsqA 528 47.93 b.55.1.8,c.45.1.3 125616,125617 1ogaD 215 49.23 b.1.1.1,b.1.1.2 86990,86991 1u69A 163 49.29 d.32.1.7 107699 2qlcA 126 49.66 1d6mA 653 50.52 e.10.1.1 43248 2htiA 185 51.22 b.45.1.1 136744 2p12A 176 51.24 2jxtA 86 51.82 2a1vA 144 51.99 d.198.3.1 126019 2c9oA 456 52.97 4ubpB 126 53.54 b.85.3.1 28345 1itwA 741 54.18 c.77.1.2 76793 1iweA 457 54.62 c.37.1.10 71486 2c5qA 240 56.26 2ijaA 295 56.64 2nptA 106 56.86 d.15.2.2 138448 1ca1A 370 57.88 a.124.1.1,b.12.1.3 19340,23648 3ck1A 150 58.54 1h8eH 146 59.59 b.93.1.1 60757 2v40A 459 60.23 2aefA 234 60.30 1maiA 131 60.64 b.55.1.1 26951 1l1oC 181 62.87 b.40.4.3 73480 2pi2A 270 62.89 1svyA 114 64.49 d.109.1.1 40831 3bpuA 88 64.51 1wmhA 89 65.36 d.15.2.2 114744 2uubE 162 65.90 d.14.1.1,d.50.1.2 139936,139937 1qf5A 431 66.77 c.37.1.10 32212 1wm3A 72 67.18 d.15.1.1 114736 1g99A 408 72.64 c.55.1.2,c.55.1.2 33457,33458 2qfdA 145 75.01 2f5vA 595 75.14 c.3.1.2,d.16.1.1 133010,133011 2qdlA 165 75.49 1y1oA 203 75.74 c.52.1.28 116345 1ub4A 110 77.52 b.34.6.2 88399 1gvpA 87 77.95 b.40.4.7 25369 2rdkA 109 78.85 2jikA 101 79.28 1amuA 563 80.07 e.23.1.1 43351 1y96A 86 80.39 1ihjA 98 80.76 b.36.1.1 62382 2qg1A 92 80.85 1qavA 90 81.01 b.36.1.1 24777 2cwpA 112 81.12 1p9bA 442 81.43 c.37.1.10 94385 2bnqD 203 81.67 1se8A 301 82.74 b.40.4.3 105448 1q7fA 286 83.96 b.68.9.1 96036 1wz9A 375 84.63 1zboA 210 84.78 b.122.1.10 124859 1uctA 218 85.22 b.1.1.4,b.1.1.4 88467,88468 1yfnA 118 86.45 b.136.1.1 123080 3cbtA 237 87.38