# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1c8cA 64 0.1160 b.34.13.1 59084 1azpA 66 0.5356 b.34.13.1 37467 1xyiA 66 0.8932 2z1cA 75 2.331 1bb8 71 4.073 1qw9A 502 7.740 b.71.1.2,c.1.8.3 96466,96467 1bb8A 71 14.32 d.10.1.1 37478 1yliA 153 15.13 d.38.1.1 123651 3bwlA 126 15.56 1h6hA 143 16.50 d.189.1.1 65681 1vpmA 169 16.66 d.38.1.1 113967 1wocA 103 17.95 1phkA 298 20.24 d.144.1.7 41635 2hr0A 645 20.37 2uurA 245 21.44 2j0wA 449 24.37 c.73.1.3,d.58.18.10,d.58.18.10 137923,137924,137925 3bjkA 153 24.70 1td4A 115 25.26 b.85.2.1 112389 2j1vA 151 25.58 1iu1A 146 27.10 b.1.10.2 71428 3ckmA 327 28.76 3bjoA 103 30.58 2ra2A 64 32.34 3bduA 62 36.34 1qfhA 212 36.80 b.1.18.10,b.1.18.10 21893,21894 3buuA 229 38.34 1gyvA 120 41.82 b.1.10.2 70790 2q2bA 179 42.65 1vr3A 191 42.71 b.82.1.6 120431 2os5A 119 42.76 2pfrA 294 45.87 1f1xA 322 48.09 d.32.1.3,d.32.1.3 83208,83209 1gcuA 295 49.14 c.2.1.3,d.81.1.4 30063,39978 3c2qA 345 51.31 1sfxA 109 51.63 a.4.5.50 105505 1twlA 186 52.80 b.40.5.1 112764 2awpA 198 53.41 1dptA 117 54.07 d.80.1.3 39862 1lswA 131 54.32 d.110.3.2 78181 2yqcA 486 55.32 1xaoA 121 55.77 1hfoA 113 56.93 d.80.1.3 61006 2a7bA 120 57.17 b.1.10.2 126333 1v3yA 192 57.37 d.167.1.1 113508 1orc 71 58.41 2jesA 503 58.98 1vl7A 157 60.25 b.45.1.1 108732 2jdiH 146 60.53 a.2.10.1,b.93.1.1 138273,138274 1vemA 516 61.20 b.3.1.1,c.1.8.1 120021,120022 1cd0A 111 61.61 b.1.1.1 20559 2phnA 254 62.23 d.340.1.1 139696 1ucsA 64 63.10 b.85.1.1 88466 1gd0A 122 64.04 d.80.1.3 39834 2pv4A 145 64.39 1hg7A 66 68.14 b.85.1.1 28280 1sg7A 96 68.72 a.239.1.1 118961 2gfaA 119 68.86 b.34.9.1,b.34.9.1 135089,135090 2cohA 202 69.03 a.4.5.4,b.82.3.2 130677,130678 1jsuC 84 70.05 j.55.1.1 46339 2r5oA 188 70.91 2inbA 140 71.72 1xj4A 119 71.90 d.110.3.2 122027 1wm3A 72 72.05 d.15.1.1 114736 2f5jA 181 72.36 2db9A 149 72.63 1earA 147 72.67 b.107.1.1,d.58.38.1 64875,64876 2e9yA 316 73.58 2r15A 212 74.75 3byvA 377 76.01 1cyx 205 76.02 2gojA 197 76.27 2i1b 153 79.60 2a19B 284 79.64 1lm6A 215 79.71 d.167.1.1 84628 2pnqA 467 80.13 1ibyA 112 80.15 b.6.1.4 62233 2ux0A 143 80.44 2ijaA 295 81.49 1st9A 143 81.61 c.47.1.10 98987 2sakA 121 83.22 d.15.5.1 37711 1r7sA 106 83.82 d.15.4.1 97207 1sxvA 172 84.25 1xjvA 294 84.73 b.40.4.3,b.40.4.3 115396,115397 2elcA 329 85.18 1wspA 84 86.31 1gv3A 248 88.19 a.2.11.1,d.44.1.1 70585,70586 1lm4A 194 88.21 d.167.1.1 84626 2gdgA 114 88.24 d.80.1.3 135015 1nr3A 122 88.27 d.236.1.1 86092 4tsvA 150 88.65 b.22.1.1 23860