# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1c8cA	64	0.2885	b.34.13.1	59084
1azpA	66	0.7090	b.34.13.1	37467
1xyiA	66	0.8650		
2z1cA	75	2.823		
1qw9A	502	8.964	b.71.1.2,c.1.8.3	96466,96467
1cd0A	111	12.52	b.1.1.1	20559
2j1vA	151	13.48		
3bduA	62	14.58		
3bwlA	126	14.90		
1wocA	103	15.56		
1bb8	71	16.27		
1sfxA	109	18.66	a.4.5.50	105505
2ra2A	64	26.58		
1sxvA	172	29.61		
1h6hA	143	29.66	d.189.1.1	65681
1lswA	131	35.79	d.110.3.2	78181
2awpA	198	36.73		
1gcuA	295	37.25	c.2.1.3,d.81.1.4	30063,39978
2os5A	119	37.58		
1bb8A	71	38.29	d.10.1.1	37478
1vpmA	169	38.55	d.38.1.1	113967
3bjoA	103	38.96		
1gyvA	120	39.35	b.1.10.2	70790
3ckmA	327	42.44		
1vemA	516	45.71	b.3.1.1,c.1.8.1	120021,120022
1td4A	115	47.30	b.85.2.1	112389
1iu1A	146	48.64	b.1.10.2	71428
1vl7A	157	49.26	b.45.1.1	108732
1ucsA	64	50.13	b.85.1.1	88466
1hg7A	66	50.79	b.85.1.1	28280
1dptA	117	50.89	d.80.1.3	39862
1orc	71	52.13		
1nr3A	122	54.69	d.236.1.1	86092
2gdgA	114	56.38	d.80.1.3	135015
1fuiA	591	56.82	b.43.2.1,c.85.1.1	25674,35444
1xj4A	119	57.36	d.110.3.2	122027
1earA	147	58.59	b.107.1.1,d.58.38.1	64875,64876
1gv3A	248	58.64	a.2.11.1,d.44.1.1	70585,70586
1xaoA	121	58.69		
1gt6A	269	59.60	c.69.1.17	76342
2f2aB	483	59.66	a.182.1.2,d.128.1.5	132802,132803
2pv4A	145	60.56		
2ddzA	190	61.26		
2re7A	134	62.90		
1jxpA	186	63.58	b.47.1.3	26402
1ecfA	504	65.51	c.61.1.1,d.153.1.1	34053,41820
1qfhA	212	65.55	b.1.18.10,b.1.18.10	21893,21894
2sakA	121	65.69	d.15.5.1	37711
2cu1A	103	66.01	d.15.2.2	130802
2yzhA	171	66.46		
1ju2A	536	66.52	c.3.1.2,d.16.1.1	77169,77170
2brqA	97	66.64	b.1.18.10	129008
2yqcA	486	67.52		
1iscA	192	69.09	a.2.11.1,d.44.1.1	15733,38726
2a7bA	120	72.75	b.1.10.2	126333
2r5oA	188	73.03		
2ux0A	143	73.52		
1jsuC	84	74.66	j.55.1.1	46339
2rb6A	61	75.27		
1jdpA	441	75.79	c.93.1.1	62906
2gfaA	119	76.05	b.34.9.1,b.34.9.1	135089,135090
1hfoA	113	76.20	d.80.1.3	61006
1yliA	153	76.20	d.38.1.1	123651
2gojA	197	77.34		
2elcA	329	79.32		
1te7A	103	79.58	b.122.1.7	112404
2a50A	73	80.39		
1jjfA	268	80.41	c.69.1.2	66765
1twlA	186	81.98	b.40.5.1	112764
1gd0A	122	82.77	d.80.1.3	39834
1f1xA	322	83.62	d.32.1.3,d.32.1.3	83208,83209
1phkA	298	83.84	d.144.1.7	41635
2f5jA	181	84.80		
1i7qB	193	84.87	c.23.16.1	61902
2uubE	162	84.88	d.14.1.1,d.50.1.2	139936,139937
1v3yA	192	85.37	d.167.1.1	113508
2jxtA	86	86.20		
2i5nH	258	87.20	b.41.1.1,f.23.10.1	137064,137065
3byvA	377	87.91		
2pnqA	467	89.67