# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1c8cA 64 0.05677 b.34.13.1 59084 1azpA 66 0.1395 b.34.13.1 37467 1xyiA 66 0.1523 1h6hA 143 1.930 d.189.1.1 65681 3bqxA 150 2.788 3bwlA 126 3.505 3bduA 62 3.639 1td4A 115 3.784 b.85.2.1 112389 1vpmA 169 4.043 d.38.1.1 113967 1st9A 143 4.134 c.47.1.10 98987 2z1cA 75 5.395 1orc 71 6.505 3c9qA 205 6.544 2sakA 121 6.780 d.15.5.1 37711 2uurA 245 7.149 2eisA 133 7.199 1jsmA 325 7.706 b.19.1.2 63264 3bjoA 103 8.312 1sxvA 172 9.151 1ju2A 536 10.09 c.3.1.2,d.16.1.1 77169,77170 2ra2A 64 10.19 1vl7A 157 10.27 b.45.1.1 108732 2q2bA 179 10.43 1vr3A 191 11.00 b.82.1.6 120431 1yliA 153 11.35 d.38.1.1 123651 1phkA 298 11.56 d.144.1.7 41635 1ohpA 125 11.83 d.17.4.3 118702 2a15A 139 11.88 d.17.4.3 125973 2prdA 174 12.29 b.40.5.1 25435 1kt6A 183 12.59 b.60.1.1 84466 1ew0A 130 13.01 d.110.3.2 40905 2imjA 166 13.08 1xvqA 175 13.29 c.47.1.10 116094 1npeA 267 13.46 b.68.5.1 92032 1orcA 71 15.12 a.35.1.2 17054 1xj4A 119 15.34 d.110.3.2 122027 1sfxA 109 15.37 a.4.5.50 105505 1dq3A 454 15.48 b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1kb0A 677 16.21 a.3.1.6,b.70.1.1 68378,68379 2ywnA 157 16.53 1vemA 516 16.72 b.3.1.1,c.1.8.1 120021,120022 2glwA 92 17.28 3bjkA 153 17.87 2j0wA 449 18.63 c.73.1.3,d.58.18.10,d.58.18.10 137923,137924,137925 1senA 164 18.86 c.47.1.1 105465 2erfA 209 18.93 b.29.1.4 132287 2ux0A 143 20.02 1lswA 131 20.32 d.110.3.2 78181 1q98A 165 21.35 c.47.1.10 96253 1a8dA 452 22.05 b.29.1.6,b.42.4.2 24262,25607 2pfrA 294 22.78 1qw9A 502 22.79 b.71.1.2,c.1.8.3 96466,96467 1jsuC 84 23.09 j.55.1.1 46339 2os5A 119 23.16 1h2kA 349 23.32 b.82.2.6 76572 1bpoA 494 24.53 a.118.1.4,b.69.6.1 19143,27670 1wocA 103 25.37 1xaoA 121 25.38 1twlA 186 25.42 b.40.5.1 112764 1earA 147 25.95 b.107.1.1,d.58.38.1 64875,64876 3bp8C 75 26.14 1orvA 728 26.35 b.70.3.1,c.69.1.24 87354,87355 2z2nA 299 26.44 1opy 131 26.59 1nr0A 611 26.64 b.69.4.1,b.69.4.1 86078,86079 1cdcA 99 27.66 b.1.1.1 19746 1jxpA 186 27.88 b.47.1.3 26402 1bb8A 71 29.37 d.10.1.1 37478 1jfuA 186 30.93 c.47.1.10 62940 2pv4A 145 30.94 1gmuA 143 31.44 b.107.1.1,d.58.38.1 65335,65336 2bklA 695 33.47 2r78A 117 35.52 1j58A 385 36.04 b.82.1.2 71531 1n9lA 109 36.45 d.110.3.6 85468 1hfoA 113 36.73 d.80.1.3 61006 1z02A 446 39.38 1hbq 183 39.41 1kqqA 139 39.67 a.4.3.1 72885 1v3yA 192 40.17 d.167.1.1 113508 1o7kA 131 41.72 d.189.1.1 81144 1t6aA 126 42.04 d.129.8.1 106555 1te7A 103 42.57 b.122.1.7 112404 1f52A 468 42.98 d.15.9.1,d.128.1.1 37839,41169 2dt4A 143 43.36 1bs4A 168 43.45 d.167.1.1 42287 2ns6A 185 43.67 1y55X 126 43.68 3byvA 377 44.14 1vpvA 300 44.68 c.119.1.1 113975 2qe8A 343 45.49 2cu1A 103 45.82 d.15.2.2 130802 1n8fA 350 46.36 c.1.10.4 85397 2v6vA 156 46.56 3c2qA 345 47.14 1y6hA 177 47.54 d.167.1.1 116505 1bb8 71 48.33 2jesA 503 48.63 1lm4A 194 48.70 d.167.1.1 84626 2gfaA 119 49.38 b.34.9.1,b.34.9.1 135089,135090 1kv9A 668 50.03 a.3.1.6,b.70.1.1 73056,73057 2gj3A 120 50.14 2ijaA 295 50.18 1x82A 190 50.46 b.82.1.7 114955 1a64A 97 50.53 b.1.1.1 19750 1dmmA 131 51.19 d.17.4.3 38114 2co3A 137 52.77 b.2.3.2 130665 1ucsA 64 52.79 b.85.1.1 88466 1n5nA 180 53.33 d.167.1.1 85336 1w5rA 278 53.43 d.3.1.5 120643 1e2wA 251 54.58 b.2.6.1,b.84.2.2 22466,28252 2hnxA 136 54.67 b.60.1.2 136633 1hg7A 66 54.68 b.85.1.1 28280 1n26A 325 55.22 b.1.1.4,b.1.2.1,b.1.2.1 79850,79851,79852 1iwlA 182 56.13 b.125.1.1 83757 2awpA 198 56.52 1gcuA 295 58.69 c.2.1.3,d.81.1.4 30063,39978 2v1oA 151 59.02 1qxrA 189 59.15 b.82.1.7 96552 2au7A 175 59.72 2nycA 144 59.89 d.37.1.1 138812 1xjvA 294 60.04 b.40.4.3,b.40.4.3 115396,115397 1cliA 345 60.24 d.79.4.1,d.139.1.1 39816,41459 1hmtA 132 61.02 b.60.1.2 27169 2jn0A 61 61.41 2gc1A 188 63.38 b.82.1.7 134928 1x99A 145 63.47 b.97.1.2 114978 2aqjA 538 64.45 1f1xA 322 64.86 d.32.1.3,d.32.1.3 83208,83209 1wmhA 89 65.57 d.15.2.2 114744 2qrwA 128 66.99 1gyvA 120 67.18 b.1.10.2 70790 1c3mA 147 67.28 b.77.3.1 27983 1v76A 96 67.90 b.137.1.1 113556 1we3O 100 67.95 b.35.1.1 109330 2yqcA 486 68.11 1gx3A 284 68.25 d.3.1.5 70678 2z8fA 412 69.07 2e9yA 316 69.15 2rftA 344 69.86 2f01A 127 72.25 b.61.1.1 132647 1wm3A 72 72.95 d.15.1.1 114736 2gojA 197 73.76 1lm6A 215 73.87 d.167.1.1 84628 2inpL 89 73.92 1xksA 450 74.21 b.69.14.1 115422 1lmeA 176 74.51 d.167.1.1 84629 2pezA 179 74.57 2he7A 283 75.81 1rkdA 309 76.05 c.72.1.1 34928 1umwA 237 76.79 d.223.1.2,d.223.1.2 99631,99632 1ayfA 105 77.78 d.15.4.1 37684 2bw2A 140 81.90 2rikA 284 82.08 1xeoA 168 82.38 d.167.1.1 121913 1jjfA 268 83.09 c.69.1.2 66765 2pil 159 83.39 2e5yA 133 83.73 2dg5A 366 85.52 d.153.1.6 131500 1xk5A 204 85.73 2o5fA 171 86.19 2ofcA 142 86.79 2fwvA 226 86.95 1ocvA 125 87.69 d.17.4.3 86810 1iu1A 146 88.04 b.1.10.2 71428 2uv4A 152 88.79 1iscA 192 89.20 a.2.11.1,d.44.1.1 15733,38726 2f5jA 181 89.38 2j82A 240 89.47 1r7sA 106 89.74 d.15.4.1 97207