# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1c8cA	64	0.1834	b.34.13.1	59084
1azpA	66	0.8961	b.34.13.1	37467
1xyiA	66	1.819		
2z1cA	75	4.466		
1qw9A	502	6.461	b.71.1.2,c.1.8.3	96466,96467
2uurA	245	10.21		
1phkA	298	10.91	d.144.1.7	41635
1bb8	71	12.79		
3bwlA	126	13.83		
1h6hA	143	19.93	d.189.1.1	65681
3bduA	62	19.98		
1cd0A	111	21.49	b.1.1.1	20559
1vr3A	191	23.52	b.82.1.6	120431
1vpmA	169	23.90	d.38.1.1	113967
1orc	71	25.44		
1vl7A	157	26.61	b.45.1.1	108732
2ux0A	143	27.83		
1kb0A	677	28.21	a.3.1.6,b.70.1.1	68378,68379
3bjoA	103	30.49		
1td4A	115	31.88	b.85.2.1	112389
1lswA	131	32.12	d.110.3.2	78181
1st9A	143	32.56	c.47.1.10	98987
2erfA	209	32.89	b.29.1.4	132287
1xj4A	119	33.14	d.110.3.2	122027
3byvA	377	34.17		
1xaoA	121	35.09		
1senA	164	36.94	c.47.1.1	105465
3co4A	312	38.47		
1gyvA	120	39.73	b.1.10.2	70790
3bjkA	153	40.25		
1iu1A	146	41.11	b.1.10.2	71428
1bb8A	71	42.85	d.10.1.1	37478
1hg7A	66	44.56	b.85.1.1	28280
2pfrA	294	45.43		
2q2bA	179	45.73		
2j0wA	449	46.70	c.73.1.3,d.58.18.10,d.58.18.10	137923,137924,137925
2a19B	284	46.93		
3ckmA	327	47.82		
1ucsA	64	48.31	b.85.1.1	88466
1wocA	103	48.77		
2r15A	212	48.88		
1x12A	208	49.08		
2jesA	503	50.08		
2glwA	92	50.55		
1f1xA	322	51.63	d.32.1.3,d.32.1.3	83208,83209
2sakA	121	51.70	d.15.5.1	37711
1ew0A	130	52.26	d.110.3.2	40905
1yliA	153	52.98	d.38.1.1	123651
1earA	147	53.48	b.107.1.1,d.58.38.1	64875,64876
1cdcA	99	53.72	b.1.1.1	19746
2f5jA	181	55.12		
2ra2A	64	56.25		
1a8dA	452	59.82	b.29.1.6,b.42.4.2	24262,25607
2dg5A	366	61.37	d.153.1.6	131500
3cokA	278	64.23		
2e9yA	316	64.77		
1ju2A	536	65.61	c.3.1.2,d.16.1.1	77169,77170
1z02A	446	65.83		
2j1vA	151	65.87		
1twlA	186	66.01	b.40.5.1	112764
2gfaA	119	66.32	b.34.9.1,b.34.9.1	135089,135090
1eu8A	409	67.17	c.94.1.1	59502
2r4iA	123	68.61		
2re7A	134	70.06		
1w5rA	278	72.60	d.3.1.5	120643
2pnqA	467	73.90		
1sfxA	109	74.56	a.4.5.50	105505
2rikA	284	75.83		
1zybA	232	77.28	a.4.5.4,b.82.3.2	125815,125816
1orcA	71	78.90	a.35.1.2	17054
2z8fA	412	79.25		
2eisA	133	83.12		
2bklA	695	83.23		
2awpA	198	83.79		
2dsrG	82	85.07		
2p9wA	334	86.45		
1wmhA	89	87.73	d.15.2.2	114744
2yqcA	486	87.78