# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1c8cA	64	0.5704	b.34.13.1	59084
1azpA	66	3.333	b.34.13.1	37467
2z1cA	75	5.468		
1xyiA	66	5.496		
1bb8	71	12.37		
1h6hA	143	15.00	d.189.1.1	65681
1qw9A	502	18.48	b.71.1.2,c.1.8.3	96466,96467
3bjkA	153	18.90		
1vr3A	191	20.68	b.82.1.6	120431
1phkA	298	23.32	d.144.1.7	41635
1td4A	115	24.05	b.85.2.1	112389
1vpmA	169	24.63	d.38.1.1	113967
1yliA	153	25.47	d.38.1.1	123651
1eu8A	409	29.83	c.94.1.1	59502
3bwlA	126	30.58		
3bjoA	103	32.29		
1gyvA	120	39.18	b.1.10.2	70790
1hg7A	66	40.76	b.85.1.1	28280
1vl7A	157	41.55	b.45.1.1	108732
1kb0A	677	43.08	a.3.1.6,b.70.1.1	68378,68379
2z8fA	412	45.06		
1bb8A	71	45.76	d.10.1.1	37478
2q2bA	179	45.99		
1ucsA	64	47.55	b.85.1.1	88466
1iu1A	146	49.81	b.1.10.2	71428
2sakA	121	50.85	d.15.5.1	37711
2cxyA	125	53.98		
2aalA	131	54.11	d.80.1.6	126483
2glwA	92	56.06		
1s1iG	119	56.54	i.1.1.1	105181
1cdcA	99	57.11	b.1.1.1	19746
3ckmA	327	57.75		
1st9A	143	57.82	c.47.1.10	98987
2f5jA	181	58.07		
2uurA	245	58.98		
1sfxA	109	61.83	a.4.5.50	105505
1orc	71	61.88		
2j0wA	449	63.15	c.73.1.3,d.58.18.10,d.58.18.10	137923,137924,137925
3bduA	62	63.42		
2pfrA	294	63.96		
1xaoA	121	66.05		
1x12A	208	66.61		
1xj4A	119	67.71	d.110.3.2	122027
1ibyA	112	67.91	b.6.1.4	62233
3byvA	377	68.81		
2j1vA	151	69.67		
1cd0A	111	76.20	b.1.1.1	20559
1y1xA	191	76.55	a.39.1.8	116374
1wocA	103	78.59		
2ux0A	143	78.89		
2fwtA	125	79.11		
1kqqA	139	79.83	a.4.3.1	72885
2f4iA	197	83.28	b.40.11.1	132923
1lswA	131	84.82	d.110.3.2	78181
1z02A	446	85.26		
3co4A	312	85.37		
2o8qA	134	85.80		
2dsrG	82	88.71