# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1c8cA	64	0.3480	b.34.13.1	59084
1azpA	66	1.787	b.34.13.1	37467
1xyiA	66	3.638		
2z1cA	75	5.865		
1bb8	71	8.866		
1h6hA	143	12.45	d.189.1.1	65681
3bjkA	153	15.12		
1qw9A	502	17.38	b.71.1.2,c.1.8.3	96466,96467
1vpmA	169	17.79	d.38.1.1	113967
1yliA	153	19.08	d.38.1.1	123651
1vr3A	191	19.66	b.82.1.6	120431
1gyvA	120	20.38	b.1.10.2	70790
1eu8A	409	20.98	c.94.1.1	59502
1phkA	298	22.70	d.144.1.7	41635
3bjoA	103	24.07		
1td4A	115	24.43	b.85.2.1	112389
1iu1A	146	26.56	b.1.10.2	71428
1bb8A	71	30.32	d.10.1.1	37478
3ckmA	327	31.34		
2z8fA	412	33.37		
2q2bA	179	34.04		
2f5jA	181	35.28		
1hg7A	66	38.42	b.85.1.1	28280
3bwlA	126	39.40		
1ucsA	64	39.98	b.85.1.1	88466
1vl7A	157	40.14	b.45.1.1	108732
1kb0A	677	45.12	a.3.1.6,b.70.1.1	68378,68379
2uurA	245	50.83		
1cdcA	99	52.54	b.1.1.1	19746
1sfxA	109	55.29	a.4.5.50	105505
1orc	71	56.59		
2ux0A	143	57.68		
2pfrA	294	59.90		
2j1vA	151	61.95		
1st9A	143	63.67	c.47.1.10	98987
1cd0A	111	63.69	b.1.1.1	20559
2j0wA	449	67.49	c.73.1.3,d.58.18.10,d.58.18.10	137923,137924,137925
3bduA	62	67.82		
2a7bA	120	70.05	b.1.10.2	126333
1twlA	186	71.78	b.40.5.1	112764
2fvyA	309	73.60	c.93.1.1	134227
3byvA	377	74.35		
2sakA	121	74.99	d.15.5.1	37711
2oojA	141	75.13		
1xaoA	121	75.59		
1xj4A	119	76.78	d.110.3.2	122027
2dsrG	82	77.07		
2aalA	131	79.04	d.80.1.6	126483
2glwA	92	83.37		
1wocA	103	83.73		
2hzbA	333	83.83	c.143.1.1	136911
1ibyA	112	84.28	b.6.1.4	62233
1ze3C	205	85.75	b.1.11.1,b.7.2.1	124974,124975
2hr0A	645	85.83		
1x12A	208	86.17		
2rikA	284	87.71		
2gfaA	119	87.93	b.34.9.1,b.34.9.1	135089,135090
2jesA	503	88.54		
1s1iG	119	88.59	i.1.1.1	105181