# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1c8cA	64	0.2307	b.34.13.1	59084
1azpA	66	0.8746	b.34.13.1	37467
1xyiA	66	0.9200		
1yliA	153	6.670	d.38.1.1	123651
2z1cA	75	6.869		
1sg7A	96	11.73	a.239.1.1	118961
3bjkA	153	13.01		
1vpmA	169	15.35	d.38.1.1	113967
1eu8A	409	17.67	c.94.1.1	59502
1x7yA	400	18.19	c.36.1.11	114944
1vctA	205	25.30	a.7.12.1,d.286.1.1	119986,119987
2v1oA	151	25.35		
1vkwA	218	25.38	d.90.1.2	108695
1dcjA	81	26.23	d.68.3.3	59115
2axpA	173	30.98	c.37.1.1	127497
2q2bA	179	38.29		
1wocA	103	44.52		
2z8fA	412	46.27		
2pv4A	145	47.01		
1ln4A	104	48.30	d.68.4.1	74043
2oyoA	196	50.46		
3bwlA	126	54.66		
2hdeA	148	56.32		
1kagA	173	61.59	c.37.1.2	72249
1ibyA	112	63.90	b.6.1.4	62233
1td4A	115	64.48	b.85.2.1	112389
1jpkA	388	64.98	c.1.22.1	67026
2j1vA	151	71.66		
1wh8A	111	71.81	a.35.1.7	114636
1gq6A	313	74.82	c.42.1.1	70341
2qrwA	128	77.61		
1wdcC	156	82.30	a.39.1.5	17317
2eisA	133	84.07		
2sakA	121	84.52	d.15.5.1	37711
2os5A	119	86.90		
2gk4A	232	86.96