# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1c8cA	64	0.2689	b.34.13.1	59084
1azpA	66	0.7443	b.34.13.1	37467
1xyiA	66	1.598		
2z1cA	75	7.053		
1phkA	298	7.119	d.144.1.7	41635
1bb8	71	9.179		
1gyvA	120	9.696	b.1.10.2	70790
3bduA	62	10.97		
2j0wA	449	11.52	c.73.1.3,d.58.18.10,d.58.18.10	137923,137924,137925
1iu1A	146	11.65	b.1.10.2	71428
1qw9A	502	14.63	b.71.1.2,c.1.8.3	96466,96467
2uurA	245	14.96		
1vpmA	169	16.22	d.38.1.1	113967
3bwlA	126	18.48		
3buuA	229	20.55		
2sakA	121	21.24	d.15.5.1	37711
1h6hA	143	21.93	d.189.1.1	65681
2ra2A	64	23.83		
1ju2A	536	23.87	c.3.1.2,d.16.1.1	77169,77170
1yliA	153	24.49	d.38.1.1	123651
1f1xA	322	24.88	d.32.1.3,d.32.1.3	83208,83209
3byvA	377	24.90		
2a7bA	120	24.95	b.1.10.2	126333
3bjkA	153	26.05		
2imjA	166	27.54		
2ux0A	143	28.13		
1a8dA	452	28.29	b.29.1.6,b.42.4.2	24262,25607
1td4A	115	29.35	b.85.2.1	112389
1bb8A	71	31.22	d.10.1.1	37478
1orc	71	35.20		
1gcuA	295	36.87	c.2.1.3,d.81.1.4	30063,39978
1vl7A	157	38.02	b.45.1.1	108732
3cgvA	397	38.08		
1ucsA	64	39.81	b.85.1.1	88466
3bqxA	150	40.77		
2q2bA	179	44.40		
1earA	147	45.72	b.107.1.1,d.58.38.1	64875,64876
1cd0A	111	45.92	b.1.1.1	20559
2pfrA	294	46.02		
3bjoA	103	46.41		
1senA	164	46.75	c.47.1.1	105465
2e9yA	316	48.21		
1yhfA	115	49.07	b.82.1.9	123176
1cdcA	99	49.08	b.1.1.1	19746
2a19B	284	49.46		
1st9A	143	49.96	c.47.1.10	98987
2erfA	209	50.20	b.29.1.4	132287
1xj4A	119	51.05	d.110.3.2	122027
2awpA	198	51.49		
1lswA	131	52.15	d.110.3.2	78181
1hg7A	66	53.02	b.85.1.1	28280
1sfxA	109	53.24	a.4.5.50	105505
1vr3A	191	54.67	b.82.1.6	120431
1wocA	103	54.99		
1kb0A	677	57.90	a.3.1.6,b.70.1.1	68378,68379
2bc3A	159	58.40	b.61.1.1	128279
1b2pA	119	59.41	b.78.1.1	27998
2cohA	202	59.61	a.4.5.4,b.82.3.2	130677,130678
2pv4A	145	61.80		
1wmhA	89	62.30	d.15.2.2	114744
2dsrG	82	63.03		
3ckmA	327	63.23		
1xaoA	121	65.91		
1z02A	446	68.64		
3co4A	312	73.72		
2os5A	119	74.29		
2eisA	133	77.15		
1zybA	232	77.64	a.4.5.4,b.82.3.2	125815,125816
2j1vA	151	79.57		
3cokA	278	80.45		
2if5A	120	81.38		
2dg5A	366	83.98	d.153.1.6	131500
1ew0A	130	84.07	d.110.3.2	40905
1nc5A	373	84.41	a.102.1.6	85548
1h54A	754	85.60	a.102.1.4,b.30.5.3	60634,60635
1orcA	71	86.27	a.35.1.2	17054
2d5wA	603	87.20		
3c9qA	205	87.77		
1ze3C	205	88.14	b.1.11.1,b.7.2.1	124974,124975