# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1c8cA 64 0.9842 b.34.13.1 59084 1xyiA 66 1.109 3c2uA 538 2.064 1wkbA 810 2.119 1yliA 153 2.139 d.38.1.1 123651 1azpA 66 2.617 b.34.13.1 37467 2hq6A 185 3.309 1mrgA 263 3.681 d.165.1.1 42183 3buuA 229 6.132 1a9xA 1058 7.253 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 1uy4A 145 9.805 b.18.1.10 108131 2imqX 282 9.845 1mroB 442 11.06 a.89.1.1,d.58.31.2 18531,39449 2z1cA 75 12.12 1rwyA 109 13.31 a.39.1.4 98002 1ecfA 504 13.89 c.61.1.1,d.153.1.1 34053,41820 3b7fA 394 16.45 1vpmA 169 17.43 d.38.1.1 113967 1sxvA 172 17.97 1zybA 232 18.28 a.4.5.4,b.82.3.2 125815,125816 2p4oA 306 18.94 3b5lB 198 19.18 1td4A 115 19.31 b.85.2.1 112389 1alvA 173 19.44 a.39.1.8 17370 2gnqA 336 19.92 1hc7A 477 20.22 c.51.1.1,d.104.1.1,d.68.5.1 60938,60939,60940 2a6vA 226 20.70 b.29.1.13 126312 2c5uA 375 21.64 1at0A 145 22.11 b.86.1.1 28374 1y1xA 191 22.79 a.39.1.8 116374 2imjA 166 23.85 1ct9A 553 24.20 c.26.2.1,d.153.1.1 31616,41834 1bb8 71 25.40 2vhxA 377 25.85 1iu1A 146 26.56 b.1.10.2 71428 1u69A 163 28.07 d.32.1.7 107699 2dg1A 333 28.70 b.68.6.1 131493 1k94A 165 28.99 a.39.1.8 68333 2cxvA 219 29.24 b.47.1.4 131012 2q2gA 180 29.41 3byvA 377 29.50 2oq0A 206 29.51 3b2tA 311 30.61 1phkA 298 31.22 d.144.1.7 41635 3bwxA 285 31.86 1lj8A 493 32.18 a.100.1.9,c.2.1.6 90392,90393 1vr3A 191 32.38 b.82.1.6 120431 1t5rA 284 32.83 f.6.1.1 106465 1evuA 731 33.41 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 21883,22175,22176,37113 2rikA 284 33.70 2uvpA 186 35.63 1qf6A 642 36.46 c.51.1.1,d.15.10.1,d.67.1.1,d.104.1.1 33210,39551,39562,40759 1wocA 103 37.32 2hw2A 143 37.53 1gcuA 295 39.64 c.2.1.3,d.81.1.4 30063,39978 1s6cA 183 39.93 a.39.1.5 98594 2dkaA 544 42.66 1qysA 106 42.74 k.41.1.1 96603 1h6hA 143 42.81 d.189.1.1 65681 1iwlA 182 43.39 b.125.1.1 83757 2a7bA 120 43.46 b.1.10.2 126333 1gg3A 279 44.04 a.11.2.1,b.55.1.5,d.15.1.4 16372,27007,37615 2eeyA 162 45.33 1rocA 155 48.82 b.1.22.1 97673 3bduA 62 48.88 1m15A 357 49.17 a.83.1.1,d.128.1.2 78368,78369 2ccmA 191 49.29 2o8bA 934 50.04 2j1vA 151 50.46 1uhnA 189 50.56 a.39.1.5 99399 1f52A 468 50.86 d.15.9.1,d.128.1.1 37839,41169 2ra2A 64 52.76 2gnpA 266 52.98 2rfiA 285 53.44 1qh5A 260 56.04 d.157.1.2 42057 1bb8A 71 57.05 d.10.1.1 37478 1f1xA 322 57.10 d.32.1.3,d.32.1.3 83208,83209 1lf6A 684 57.29 a.102.1.5,b.30.5.5 77918,77919 2gfaA 119 57.75 b.34.9.1,b.34.9.1 135089,135090 2iw2A 494 57.97 2q0dA 353 58.17 1jsmB 176 58.28 h.3.1.1 63265 2bvaA 292 59.89 1a3qA 285 60.84 b.1.18.1,b.2.5.3 21932,22447 2erfA 209 61.16 b.29.1.4 132287 1xezA 721 61.78 1v3yA 192 64.00 d.167.1.1 113508 2uurA 245 64.05 2fgtA 417 64.23 1yhfA 115 64.59 b.82.1.9 123176 1thjA 214 64.84 b.81.1.5 28072 2au7A 175 65.71 1xx4A 261 66.09 c.14.1.3 116138 1m3iA 471 66.32 f.9.1.1 91178 1namB 113 67.05 b.1.1.1 85489 2qrwA 128 67.60 1jsmA 325 68.19 b.19.1.2 63264 2j8gA 339 68.31 1ejeA 192 71.08 b.45.1.2 25757 1ze3C 205 71.12 b.1.11.1,b.7.2.1 124974,124975 2d5lA 706 72.15 1senA 164 72.21 c.47.1.1 105465 2illA 195 75.44 2a38A 194 76.00 2c4eA 302 76.61 1yvkA 163 77.69 d.108.1.1 124101 1a9xB 379 80.57 c.8.3.1,c.23.16.1 30732,31409 1n62C 288 80.58 d.87.2.1,d.145.1.3 80094,80095 1md6A 154 80.91 b.42.1.2 91242 2fvyA 309 80.92 c.93.1.1 134227 2cohA 202 81.53 a.4.5.4,b.82.3.2 130677,130678 1hbnB 442 82.99 a.89.1.1,d.58.31.2 60900,60901 2dg5A 366 85.81 d.153.1.6 131500 1st9A 143 86.62 c.47.1.10 98987 1wwcA 118 89.28 b.1.1.4 21778