# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1c8cA 64 0.3503 b.34.13.1 59084 1azpA 66 1.055 b.34.13.1 37467 1xyiA 66 1.587 1bb8 71 5.793 1yliA 153 5.928 d.38.1.1 123651 2z1cA 75 5.960 1vpmA 169 6.094 d.38.1.1 113967 3bjkA 153 6.399 1phkA 298 12.26 d.144.1.7 41635 1qw9A 502 14.08 b.71.1.2,c.1.8.3 96466,96467 1gyvA 120 16.00 b.1.10.2 70790 1bb8A 71 18.12 d.10.1.1 37478 1td4A 115 18.13 b.85.2.1 112389 1iu1A 146 19.60 b.1.10.2 71428 3buuA 229 23.35 3bduA 62 24.01 2j0wA 449 27.63 c.73.1.3,d.58.18.10,d.58.18.10 137923,137924,137925 2cohA 202 28.78 a.4.5.4,b.82.3.2 130677,130678 1ucsA 64 30.21 b.85.1.1 88466 2z8fA 412 31.17 2j1vA 151 32.83 1senA 164 35.00 c.47.1.1 105465 1h6hA 143 35.26 d.189.1.1 65681 2q2bA 179 37.59 3bjoA 103 38.58 1hg7A 66 41.02 b.85.1.1 28280 2a7bA 120 41.22 b.1.10.2 126333 3bwlA 126 41.35 1f1xA 322 41.71 d.32.1.3,d.32.1.3 83208,83209 3byvA 377 42.06 1cd0A 111 42.41 b.1.1.1 20559 2sakA 121 44.70 d.15.5.1 37711 1sfxA 109 45.89 a.4.5.50 105505 1ze3C 205 47.68 b.1.11.1,b.7.2.1 124974,124975 2os5A 119 50.18 3ckmA 327 50.31 1eu8A 409 53.12 c.94.1.1 59502 3c9qA 205 53.34 2pv4A 145 53.87 1s1iG 119 54.44 i.1.1.1 105181 1z02A 446 55.09 2vl6A 268 56.50 1ju2A 536 57.13 c.3.1.2,d.16.1.1 77169,77170 2ra2A 64 58.22 1yhfA 115 59.04 b.82.1.9 123176 1gcuA 295 60.62 c.2.1.3,d.81.1.4 30063,39978 1zybA 232 60.87 a.4.5.4,b.82.3.2 125815,125816 1sg7A 96 62.40 a.239.1.1 118961 2aalA 131 64.32 d.80.1.6 126483 2awpA 198 64.60 1a8dA 452 65.98 b.29.1.6,b.42.4.2 24262,25607 1ltlA 279 70.85 b.40.4.11 84701 1wm3A 72 72.06 d.15.1.1 114736 1xjvA 294 73.66 b.40.4.3,b.40.4.3 115396,115397 1orc 71 74.19 1dptA 117 76.05 d.80.1.3 39862 1cdcA 99 76.31 b.1.1.1 19746 2gdgA 114 77.28 d.80.1.3 135015 2dsrG 82 77.92 2inbA 140 79.82 2fvyA 309 80.31 c.93.1.1 134227 1nc5A 373 81.06 a.102.1.6 85548 2f5jA 181 81.70 1gt6A 269 81.97 c.69.1.17 76342 1vl7A 157 81.98 b.45.1.1 108732 2pfrA 294 84.15 1i7qB 193 84.64 c.23.16.1 61902 1earA 147 85.41 b.107.1.1,d.58.38.1 64875,64876 1wmhA 89 86.01 d.15.2.2 114744 2eisA 133 87.42 1kb0A 677 88.40 a.3.1.6,b.70.1.1 68378,68379 2jdiH 146 88.41 a.2.10.1,b.93.1.1 138273,138274 1wocA 103 88.78 3c19A 186 89.13 1rocA 155 89.75 b.1.22.1 97673 2bvlA 543 89.91