# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1c8cA	64	0.3482	b.34.13.1	59084
1azpA	66	2.156	b.34.13.1	37467
1xyiA	66	2.454		
2z1cA	75	5.877		
1bb8	71	7.008		
1qw9A	502	16.50	b.71.1.2,c.1.8.3	96466,96467
1gyvA	120	17.32	b.1.10.2	70790
1td4A	115	19.71	b.85.2.1	112389
1iu1A	146	23.39	b.1.10.2	71428
1sfxA	109	23.93	a.4.5.50	105505
1bb8A	71	24.24	d.10.1.1	37478
1vpmA	169	25.91	d.38.1.1	113967
1yliA	153	29.85	d.38.1.1	123651
1phkA	298	38.50	d.144.1.7	41635
1h6hA	143	38.82	d.189.1.1	65681
1ze3C	205	39.40	b.1.11.1,b.7.2.1	124974,124975
3bjkA	153	39.42		
2a7bA	120	43.05	b.1.10.2	126333
1x7yA	400	46.87	c.36.1.11	114944
1jxpA	186	48.83	b.47.1.3	26402
1ucsA	64	50.02	b.85.1.1	88466
1hg7A	66	50.98	b.85.1.1	28280
1eu8A	409	51.04	c.94.1.1	59502
1i7qB	193	51.20	c.23.16.1	61902
1vr3A	191	51.36	b.82.1.6	120431
2f4iA	197	51.51	b.40.11.1	132923
1cd0A	111	54.38	b.1.1.1	20559
2f5jA	181	55.79		
1x12A	208	56.03		
2j1vA	151	56.42		
3bjoA	103	58.69		
3bwlA	126	60.96		
1fuiA	591	61.26	b.43.2.1,c.85.1.1	25674,35444
3co4A	312	61.36		
2yqcA	486	62.76		
2z8fA	412	62.96		
2sakA	121	64.08	d.15.5.1	37711
2jdiH	146	64.28	a.2.10.1,b.93.1.1	138273,138274
2j0wA	449	68.14	c.73.1.3,d.58.18.10,d.58.18.10	137923,137924,137925
1wocA	103	70.81		
1senA	164	71.50	c.47.1.1	105465
1s1iG	119	72.19	i.1.1.1	105181
2q2bA	179	76.49		
3ckmA	327	77.87		
1wkbA	810	78.63		
1feuA	206	79.23	b.53.1.1	59801
1cyx	205	84.34		
1t6aA	126	85.31	d.129.8.1	106555
1cfb	205	85.52		
1b5fB	87	87.21		
2os5A	119	88.86