# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1c8cA	64	0.3019	b.34.13.1	59084
1azpA	66	1.124	b.34.13.1	37467
1xyiA	66	1.212		
2z1cA	75	5.248		
1td4A	115	11.53	b.85.2.1	112389
1bb8	71	13.33		
1phkA	298	13.69	d.144.1.7	41635
2j0wA	449	18.41	c.73.1.3,d.58.18.10,d.58.18.10	137923,137924,137925
1h6hA	143	18.47	d.189.1.1	65681
1vpmA	169	19.77	d.38.1.1	113967
1sfxA	109	20.31	a.4.5.50	105505
3bjoA	103	20.77		
1gyvA	120	22.82	b.1.10.2	70790
1yliA	153	23.65	d.38.1.1	123651
3bwlA	126	25.88		
1iu1A	146	26.42	b.1.10.2	71428
3bjkA	153	28.95		
1st9A	143	29.78	c.47.1.10	98987
1senA	164	30.94	c.47.1.1	105465
3bduA	62	30.96		
2uurA	245	32.61		
1vl7A	157	34.73	b.45.1.1	108732
2sakA	121	36.89	d.15.5.1	37711
3byvA	377	39.51		
2ns6A	185	39.88		
2q2bA	179	40.35		
1ucsA	64	42.19	b.85.1.1	88466
1hg7A	66	42.33	b.85.1.1	28280
2pv4A	145	43.83		
2eisA	133	44.50		
1z02A	446	45.46		
1gcuA	295	48.12	c.2.1.3,d.81.1.4	30063,39978
2ra2A	64	48.40		
1bb8A	71	48.66	d.10.1.1	37478
1orc	71	48.69		
3c9qA	205	49.38		
2aalA	131	49.57	d.80.1.6	126483
2bklA	695	49.83		
3buuA	229	50.27		
2z8fA	412	51.30		
1f1xA	322	51.97	d.32.1.3,d.32.1.3	83208,83209
1wocA	103	51.98		
1sxvA	172	52.14		
2os5A	119	53.29		
2prdA	174	53.30	b.40.5.1	25435
3cokA	278	53.51		
1vemA	516	55.26	b.3.1.1,c.1.8.1	120021,120022
1ju2A	536	55.67	c.3.1.2,d.16.1.1	77169,77170
2pfrA	294	57.56		
2dsrG	82	58.40		
2e9yA	316	59.04		
1eu8A	409	59.36	c.94.1.1	59502
2a7bA	120	61.97	b.1.10.2	126333
1x7yA	400	63.43	c.36.1.11	114944
2f5jA	181	64.47		
1wm3A	72	64.86	d.15.1.1	114736
1jsuC	84	67.52	j.55.1.1	46339
2inbA	140	68.85		
1v3yA	192	68.89	d.167.1.1	113508
1vr3A	191	70.64	b.82.1.6	120431
2imjA	166	71.22		
1kb0A	677	71.42	a.3.1.6,b.70.1.1	68378,68379
1lm4A	194	72.26	d.167.1.1	84626
2hzbA	333	73.08	c.143.1.1	136911
1earA	147	77.11	b.107.1.1,d.58.38.1	64875,64876
1nr0A	611	79.00	b.69.4.1,b.69.4.1	86078,86079
3bqxA	150	83.87		
1xj4A	119	86.12	d.110.3.2	122027
1qw9A	502	86.13	b.71.1.2,c.1.8.3	96466,96467
2j1vA	151	86.98