# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1c8cA	64	0.3619	b.34.13.1	59084
1azpA	66	1.310	b.34.13.1	37467
1xyiA	66	1.389		
2z1cA	75	5.063		
1bb8	71	8.870		
1phkA	298	9.561	d.144.1.7	41635
1td4A	115	18.41	b.85.2.1	112389
1vpmA	169	19.15	d.38.1.1	113967
1eu8A	409	20.09	c.94.1.1	59502
1yliA	153	22.44	d.38.1.1	123651
3bjoA	103	26.03		
3bjkA	153	26.34		
1bb8A	71	31.38	d.10.1.1	37478
1iu1A	146	33.78	b.1.10.2	71428
3bwlA	126	34.47		
2sakA	121	34.53	d.15.5.1	37711
1vr3A	191	35.97	b.82.1.6	120431
1h6hA	143	38.73	d.189.1.1	65681
3bduA	62	39.33		
1sfxA	109	40.77	a.4.5.50	105505
1gyvA	120	41.46	b.1.10.2	70790
2q2bA	179	42.41		
1orc	71	42.97		
2aalA	131	43.69	d.80.1.6	126483
1senA	164	46.68	c.47.1.1	105465
2f5jA	181	47.39		
1sg7A	96	47.58	a.239.1.1	118961
1x7yA	400	47.91	c.36.1.11	114944
1vl7A	157	48.43	b.45.1.1	108732
2aqjA	538	51.17		
2pv4A	145	56.03		
1cdcA	99	57.57	b.1.1.1	19746
1st9A	143	61.95	c.47.1.10	98987
1hg7A	66	62.54	b.85.1.1	28280
2cohA	202	63.37	a.4.5.4,b.82.3.2	130677,130678
1cyx	205	65.67		
2gfaA	119	66.05	b.34.9.1,b.34.9.1	135089,135090
1qw9A	502	66.31	b.71.1.2,c.1.8.3	96466,96467
2os5A	119	67.61		
2inbA	140	68.50		
1ucsA	64	69.65	b.85.1.1	88466
1wocA	103	69.69		
2ra2A	64	75.66		
1earA	147	76.73	b.107.1.1,d.58.38.1	64875,64876
2z8fA	412	77.11		
1x12A	208	78.48		
1ze3C	205	80.10	b.1.11.1,b.7.2.1	124974,124975
1v3yA	192	80.69	d.167.1.1	113508
1gcuA	295	80.75	c.2.1.3,d.81.1.4	30063,39978
1jxpA	186	81.46	b.47.1.3	26402
2uurA	245	82.88		
2eisA	133	82.98		
2vl6A	268	84.90		
2ywnA	157	85.31		
2j0wA	449	86.53	c.73.1.3,d.58.18.10,d.58.18.10	137923,137924,137925
1t6aA	126	86.59	d.129.8.1	106555
2j1vA	151	88.64		
1orcA	71	89.45	a.35.1.2	17054
1twlA	186	89.64	b.40.5.1	112764