# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1c8cA	64	0.3553	b.34.13.1	59084
1xyiA	66	1.668		
1azpA	66	1.751	b.34.13.1	37467
2z1cA	75	2.505		
2qv8A	159	7.064		
3buuA	229	7.468		
1bb8	71	8.413		
1yliA	153	8.753	d.38.1.1	123651
1zq1A	438	10.32	b.38.3.1,c.88.1.1	125489,125490
3bjkA	153	13.29		
1vctA	205	13.65	a.7.12.1,d.286.1.1	119986,119987
2q2bA	179	14.48		
1x7yA	400	15.23	c.36.1.11	114944
1rwyA	109	16.26	a.39.1.4	98002
1l2hA	153	16.44	b.42.1.2	77655
2v1oA	151	17.29		
1vpmA	169	18.39	d.38.1.1	113967
1td4A	115	21.31	b.85.2.1	112389
1sfxA	109	22.25	a.4.5.50	105505
1uw4B	248	22.82	a.118.1.14	100072
1bb8A	71	22.86	d.10.1.1	37478
2qrwA	128	26.67		
2oemA	413	27.27		
1e4yA	214	27.83	c.37.1.1,g.41.2.1	31901,45181
1a41A	234	28.01	d.163.1.2	42174
1h2cA	140	28.27	b.31.1.1	83462
1eu8A	409	29.13	c.94.1.1	59502
2aefA	234	29.98		
3bpzA	202	33.05		
1or7A	194	35.04	a.4.13.2,a.177.1.1	87332,87333
2dlxA	153	38.02		
1q38A	89	44.34	b.1.2.1	95663
2i1b	153	45.52		
1k2eA	156	46.64	d.113.1.1	72010
2e5pA	68	48.35		
1lj8A	493	52.06	a.100.1.9,c.2.1.6	90392,90393
2f51A	118	52.90		
2b8wA	328	53.53		
2bvlA	543	54.10		
1egnA	434	57.08	b.29.1.10	59411
2p9rA	102	58.89		
1svmA	377	60.81	c.37.1.20	112126
1mbyA	88	61.39	d.223.1.1	78931
1jmmA	377	63.64	b.30.6.1	71749
1ucsA	64	65.75	b.85.1.1	88466
1q2bA	434	65.88	b.29.1.10	95624
1xvjA	109	67.78		
1wm3A	72	68.11	d.15.1.1	114736
2z8fA	412	69.16		
2fwtA	125	70.47		
2egvA	229	71.38		
2dhzA	120	71.49		
1ltlA	279	71.59	b.40.4.11	84701
1bdyA	123	72.13	b.7.1.1	23190
1ntyA	311	72.62	a.87.1.1,b.55.1.1	103873,103874
1jo0A	98	74.84	d.68.4.1	77140
2coiA	386	75.10		
1wgrA	100	75.28	d.15.1.5	114621
1t6aA	126	77.05	d.129.8.1	106555
2db9A	149	78.09		
2gvhA	288	79.40	d.38.1.1,d.38.1.1	135776,135777
2uurA	245	80.46		
1cfrA	285	81.58	c.52.1.7	33312
1zoyD	103	82.01		
1wdcC	156	83.06	a.39.1.5	17317
2aj7A	163	83.64	b.158.1.1	126842
2re7A	134	86.30		
2os5A	119	86.86		
2csvA	72	87.40