# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1c8cA	64	1.103	b.34.13.1	59084
1azpA	66	2.235	b.34.13.1	37467
1xyiA	66	2.820		
1x7yA	400	12.19	c.36.1.11	114944
2z1cA	75	17.78		
2q2bA	179	23.84		
1bb8	71	26.36		
2axpA	173	40.44	c.37.1.1	127497
1vpmA	169	41.01	d.38.1.1	113967
1eu8A	409	41.07	c.94.1.1	59502
3bjkA	153	50.24		
1yliA	153	50.41	d.38.1.1	123651
2v1oA	151	51.61		
1h6hA	143	52.77	d.189.1.1	65681
2uurA	245	65.02		
1jo0A	98	66.28	d.68.4.1	77140
1bb8A	71	68.93	d.10.1.1	37478
2pijA	67	76.07		
1aj2	282	76.71