# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2e5yA 133 0.9462 1azpA 66 1.466 b.34.13.1 37467 1xyiA 66 1.787 2e2dC 180 1.860 b.40.3.1 131980 3ba3A 145 2.253 2i5hA 205 3.590 2pbcA 102 3.890 1wocA 103 4.155 1v1qA 134 4.803 b.40.4.3 113490 1e79H 146 5.270 a.2.10.1,b.93.1.1 15721,28438 1h8eH 146 6.968 b.93.1.1 60757 1vcdA 126 7.041 d.113.1.1 119970 1c8cA 64 7.912 b.34.13.1 59084 2qdlA 165 8.020 2oqkA 117 8.944 1zq7A 207 9.847 d.309.1.1 125501 1quqB 121 11.25 b.40.4.3 25305 3pviA 157 12.27 c.52.1.6 33300 1ou8A 111 12.38 b.136.1.1 93543 2qqrA 118 12.50 2gfaA 119 12.59 b.34.9.1,b.34.9.1 135089,135090 1br9 194 13.54 2z1cA 75 14.65 1txyA 104 15.84 b.40.4.3 112791 2pviA 157 17.81 c.52.1.6 33302 1i40A 175 19.88 b.40.5.1 66024 1fs0E 138 20.31 a.2.10.1,b.93.1.1 59997,59998 2prdA 174 21.24 b.40.5.1 25435 2uyzB 79 22.47 d.15.1.1 140039 2halA 212 22.82 b.47.1.4 136289 2au7A 175 24.64 2htiA 185 24.65 b.45.1.1 136744 2cxvA 219 24.84 b.47.1.4 131012 3ck1A 150 25.49 2aefA 234 25.78 2i8tA 167 25.97 2bqxA 173 27.52 1fc1A 224 28.85 b.1.1.2,b.1.1.2 21520,21521 1erxA 184 28.97 b.60.1.1 27164 1i7dA 659 30.48 e.10.1.1 61886 1rypC 244 30.91 d.153.1.4 41934 1sjyA 159 30.97 d.113.1.1 98900 2yzhA 171 31.19 2pi2E 142 32.33 1who 96 33.15 2jxtA 86 33.16 2fxqA 264 33.81 1rypE 242 38.42 d.153.1.4 41936 1jmcA 246 38.94 b.40.4.3,b.40.4.3 25300,25301 1itwA 741 39.34 c.77.1.2 76793 1whoA 96 44.00 b.7.3.1 23215 1iweA 457 44.07 c.37.1.10 71486 1n0lA 224 44.15 b.1.11.1,b.7.2.1 79744,79745 1wmhA 89 44.83 d.15.2.2 114744 1havA 217 45.84 b.47.1.4 26423 1gal 583 46.69 1sxvA 172 47.83 2qlcA 126 48.78 2qfdA 145 48.83 2a19A 175 50.85 2ak4D 211 51.01 1d7qA 143 52.85 b.40.4.5 25331 1u8xX 472 53.10 c.2.1.5,d.162.1.2 107741,107742 1yfnA 118 53.61 b.136.1.1 123080 2gzvA 114 53.85 1nrgA 261 55.32 b.45.1.1 80694 1k0iA 394 55.51 c.3.1.2,d.16.1.2 67942,67943 1neuA 124 56.50 b.1.1.1 19704 1ub4A 110 57.40 b.34.6.2 88399 1ju2A 536 57.60 c.3.1.2,d.16.1.1 77169,77170 2frgP 106 58.49 1bmdA 327 58.80 c.2.1.5,d.162.1.1 30139,42106 1d6mA 653 59.56 e.10.1.1 43248 1g2rA 100 60.46 d.192.1.1 60231 1x4rA 99 61.41 1y1oA 203 61.64 c.52.1.28 116345 2oyoA 196 64.08 1hskA 326 65.54 d.145.1.2,d.146.1.1 61241,61242 1x6oA 174 66.55 b.34.5.2,b.40.4.5 109493,109494 2nptA 106 68.06 d.15.2.2 138448 2bw2A 140 68.69 1hztA 190 70.77 d.113.1.2 61459 2o5cA 659 70.82 2czrA 226 71.02 1l6oA 95 71.48 b.36.1.1 84534 1xweA 151 73.77 b.40.3.3 116125 1obbA 480 76.10 c.2.1.5,d.162.1.2 86760,86761 1u5fA 148 76.21 b.55.1.1 119542 1ybyA 215 77.25 2ig6A 150 77.74 2r2yA 153 78.92 1fl0A 171 79.96 b.40.4.4 25315 1xccA 220 80.59 c.47.1.10 115113 2pbtA 134 81.02 1guzA 310 83.08 c.2.1.5,d.162.1.1 65586,65587 1lci 550 83.15 3c5pA 197 84.21 1qf5A 431 85.68 c.37.1.10 32212 1o7iA 119 87.17 b.40.4.3 86642 1fjgP 88 88.70 d.27.1.1 38444