# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 4.53e-14 2gcxA 75 5.99e-14 2dtrA 226 2.14e-06 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1fx7A 230 2.42e-06 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1qw1A 121 6.45e-06 2qq9A 226 0.000220 1j48A 110 1.060 b.1.7.1 84112 2aotA 292 1.064 c.66.1.19 127098 2e87A 357 1.416 1rhsA 296 1.742 c.46.1.2,c.46.1.2 32703,32704 1rhs 296 1.934 2egxA 269 3.632 1vekA 84 3.633 a.5.2.1 113636 1o6aA 96 3.964 b.139.1.1 92562 1uarA 285 5.152 c.46.1.2,c.46.1.2 107762,107763 3bn1A 373 5.274 1fqtA 112 5.892 b.33.1.1 24441 1zc1A 208 6.137 1y8xB 98 6.310 1l2tA 235 7.579 c.37.1.12 73514 2yv5A 302 7.847 2ogeA 399 7.858 2aouA 292 8.041 c.66.1.19 127100 1o69A 394 8.063 c.67.1.4 92560 2fa1A 160 8.322 d.190.1.2 133182 2ff7A 247 8.573 c.37.1.12 133377 2c81A 418 8.954 2p19A 149 9.027 2okfA 140 9.043 1gsjA 258 9.248 c.73.1.2 70397 1nf2A 268 9.832 c.108.1.10 91849 2ixeA 271 10.78 2gj8A 172 10.78 c.37.1.8 135270 2fjtA 182 12.89 2g29A 417 12.93 2pmkA 243 13.11 3cnvA 162 13.48 1gutA 68 14.30 b.40.6.1 65576 1pujA 282 14.76 c.37.1.8 88294 3c0dA 119 14.82 2ikkA 173 15.08 1t9hA 307 15.21 b.40.4.5,c.37.1.8 112358,112359 2j6iA 364 15.34 2zgwA 235 15.44 1g8kB 133 15.62 b.33.1.1 24435 2ooiA 162 15.73 2inbA 140 15.76 1e0cA 271 16.55 c.46.1.2,c.46.1.2 32717,32718 1nrwA 288 16.98 c.108.1.10 86128 2o55A 258 17.00 1h75A 81 17.19 c.47.1.1 60716 1ni3A 392 17.27 c.37.1.8,d.15.10.2 80531,80532 1vd6A 224 17.29 c.1.18.3 119991 2nygA 273 17.73 1wf3A 301 18.80 c.37.1.8,d.52.3.1 114574,114575 2fssA 365 20.72 1g6hA 257 20.89 c.37.1.12 60318 1opdA 85 20.93 d.94.1.1 40560 2dbyA 368 21.20 1ji0A 240 21.38 c.37.1.12 71665 1i8dA 213 21.50 b.43.4.3,b.43.4.3 61953,61954 1lvmA 229 21.82 b.47.1.3 78243 2hnfA 133 21.94 3ch0A 272 22.05 1o9yA 84 22.22 b.139.1.1 92692 2ev1A 222 22.33 1b0uA 262 22.38 c.37.1.12 32370 2d2eA 250 22.95 1pchA 88 23.02 d.94.1.1 40564 2dejA 350 23.18 2de0X 526 23.33 2pz0A 252 23.42 2bbsA 290 23.91 2oogA 287 23.96 1yqbA 100 24.03 d.15.1.1 123876 1h65A 270 24.08 c.37.1.8 65640 1oxxK 353 24.22 b.40.6.3,c.37.1.12 93715,93716 2acaA 189 24.70 d.63.1.2 126545 2ftxB 64 25.93 d.300.1.2 134086 1wg8A 285 26.26 a.60.13.1,c.66.1.23 114605,114606 1ptfA 88 26.28 d.94.1.1 40549 2eayA 233 27.00 1vg5A 73 27.11 a.5.2.1 113640 1wwkA 307 27.57 1fr3A 67 28.39 b.40.6.1 25436 1h9mA 145 28.58 b.40.6.2,b.40.6.2 60833,60834 2v3mA 131 29.05 2yzvA 303 29.18 2cbzA 237 29.22 2zbvA 263 29.25 1ti6A 875 29.56 b.52.2.2,c.81.1.1 106974,106975 1udxA 416 30.30 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1ri5A 298 30.46 c.66.1.34 97502 1gdhA 320 30.82 c.2.1.4,c.23.12.1 30095,31355 2dbqA 334 31.48 1z47A 355 31.95 2cukA 311 32.03 2eklA 313 32.30 1eluA 390 33.39 c.67.1.3 34434 1z2mA 155 34.16 d.15.1.1,d.15.1.1 124387,124388 1qp8A 303 34.98 c.2.1.4,c.23.12.1 30092,31352 2pcjA 224 35.49 2bl9A 238 37.13 2hjgA 436 38.47 2gcgA 330 38.91 1z3eB 73 39.07 a.60.3.1 124401 1mr7A 209 40.17 b.81.1.3 91430 2e4qA 109 40.33 1kzlA 208 40.72 b.43.4.3,b.43.4.3 77635,77636 1dv0A 47 44.30 a.5.2.1 16289 2qi9C 249 44.63 1im8A 244 44.64 c.66.1.14 66212 1sgwA 214 44.67 c.37.1.12 105541 1rwzA 245 45.41 d.131.1.2,d.131.1.2 98005,98006 1z02A 446 45.70 1mx3A 347 45.73 c.2.1.4,c.23.12.1 79638,79639 2p3yA 491 45.86 2yvqA 143 46.32 1zccA 248 46.90 c.1.18.3 124903 2qwvA 208 47.56 1g291 372 47.79 2ob3A 330 47.84 1pch 88 48.27 2d0iA 333 48.51 1v95A 130 49.38 c.51.1.1 108435 1kvkA 395 50.37 d.14.1.5,d.58.26.3 73060,73061 2oap1 511 51.95 2if1A 126 52.06 d.64.1.1 39547 1vplA 256 52.07 c.37.1.12 113966 2ffqA 171 52.28 1uc2A 481 52.31 d.261.1.1 99161 2pzeA 229 52.60 2g76A 335 53.93 2bcgY 206 54.13 c.37.1.8 128285 1sc6A 404 55.19 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1f6bA 198 55.80 c.37.1.8 64986 1ornA 226 56.95 a.96.1.1 87342 2nwiA 172 57.09 1yzqA 170 58.75 c.37.1.8 124286 2jg1A 330 59.03 1k0wA 231 59.11 c.74.1.1 77220 1m6yA 301 59.54 a.60.13.1,c.66.1.23 78716,78717 1dxy 333 60.26 2qptA 550 62.61 3bhdA 234 63.42 2d1hA 109 63.44 a.4.5.50 131125 1l3iA 192 64.88 c.66.1.22 77676 1ee4A 423 65.03 a.118.1.1 19128 2g6bA 180 65.69 c.37.1.8 134701 1szoA 257 65.95 c.14.1.3 106164 3d64A 494 67.07 2oqaA 241 67.14 1sphA 88 67.32 d.94.1.1 40544 1wmsA 177 67.63 c.37.1.8 109414 1n0wA 243 68.41 c.37.1.11 79772 1dxyA 333 69.51 c.2.1.4,c.23.12.1 30094,31354 2a5jA 191 70.10 c.37.1.8 126175 1nrjB 218 70.88 c.37.1.8 86125 2oq0A 206 71.28 1iooA 196 71.79 d.124.1.1 71250 3cq9A 227 72.02 2fazA 78 72.71 d.15.1.1 133223 1rfsA 139 75.28 b.33.1.1 24434 1nlfA 279 75.71 c.37.1.11 85850 1wteA 272 76.18 c.52.1.29 114876 1z96A 40 76.25 1z2aA 168 76.41 c.37.1.8 124374 1aoeA 192 76.62 c.71.1.1 34923 1el6A 219 78.12 d.182.1.1 42606 2nq2C 253 78.40 1f5nA 592 78.45 a.114.1.1,c.37.1.8 19077,32152 2it1A 362 79.10 2jo6A 113 79.29 2ihyA 279 79.39 2epgA 487 80.55 2qpqA 301 80.87 1q02A 52 80.97 a.5.2.1 95490 1qg4A 216 83.23 c.37.1.8 32035 2fm8A 135 83.63 d.198.1.1 133767 1rttA 193 84.04 c.23.5.4 105098 2h17A 181 84.36 5nulA 138 84.39 c.23.5.1 31191 1dzfA 215 85.07 c.52.3.1,d.78.1.1 33344,39753 1ygyA 529 85.61 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1wwpA 119 87.58 2pi1A 334 88.00 2h57A 190 89.08 1xdwA 331 89.14 1iz6A 138 89.37 b.34.5.2,b.40.4.5 76976,76977 1rlmA 271 89.68 c.108.1.10 111860