# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2obaA	138	22.50		
1y13A	181	28.20	d.96.1.2	116319
1x3zB	72	28.22	a.189.1.1	121674
1f5jA	199	31.62	b.29.1.11	24342
2jwiA	143	33.59		
1zckA	154	38.70		
2hcrA	326	45.00		
1h4gA	207	45.03	b.29.1.11	70863
2ictA	94	46.25		
2a84A	300	48.19	c.26.1.4	126389
1id3B	102	50.82	a.22.1.1	66113
2odtX	328	51.41		
1aoiB	87	53.52	a.22.1.1	16470
2jzfA	143	57.24		
1t01A	255	58.30	a.24.9.1,a.24.9.1	106188,106189
2jzdA	129	64.62		
2vkjA	106	66.91		
1z2nX	324	71.23		
1dutA	133	73.66	b.85.4.1	28355
2nqtA	352	73.78		
1n2eA	300	74.14	c.26.1.4	85268
3cecA	104	78.24		
1a66A	178	79.02	b.2.5.3	22441
1h1aA	191	80.24	b.29.1.11	83450
1fqvD	149	82.92	a.157.1.1,d.42.1.1	19263,38667
2dj6A	115	83.11		
1f7dA	136	85.53	b.85.4.1	28353
2gar	212	85.65		
1jmvA	141	85.65	c.26.2.4	66897
2b7kA	200	85.67	c.47.1.10	128042
1amy	403	86.10		
1pvxA	194	86.79	b.29.1.11	24341
1ubkS	267	89.88	e.19.1.1	88423